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Report for CCDS17232.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17232.1 Public Mus musculus 3 Hey1 23 108 98 CCDS HistoryNCBI Gene:15213Re-query CCDS DB by CCDS ID:17232.1Re-query CCDS DB by GeneID:15213See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17232.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000042412.4 ENSMUSP00000038014.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000042412.4Link to Ensembl Protein Viewer:ENSMUSP00000038014.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000042412Re-query CCDS DB by Protein ID:ENSMUSP00000038014
Original member Current member NCBI NM_010423.2 NP_034553.2 Accepted alive Link to Nucleotide Sequence:NM_010423.2Link to Protein Sequence:NP_034553.2Re-query CCDS DB by Nucleotide ID:NM_010423Re-query CCDS DB by Protein ID:NP_034553Link to BLAST:NP_034553.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034553.2 299 Q9WV93 299 99.6656% 0 1

Chromosomal Locations for CCDS 17232.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 8664496 8665064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 8665945 8666026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 8666272 8666355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 8666502 8666577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 8666782 8666870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (900 nt):
ATGAAGAGAGCTCACCCAGACTACAGCTCCTCAGATAGTGAGCTGGACGAGACCATCGAGGTGGAAAAGG
AGAGCGCGGACGAGAATGGAAACTTGAGTTCGGCGCTGTGTTCCATGTCCCCAACGACATCGTCCCAGGT
TTTGGCCAGGAAAAGACGGAGAGGCATCATCGAGAAGCGCCGACGAGACCGAATCAATAACAGTTTGTCT
GAGCTGAGAAGGCTGGTACCCAGTGCCTTTGAGAAGCAGGGATCTGCTAAGCTAGAAAAAGCTGAGATCT
TGCAGATGACTGTGGATCACCTGAAAATGCTGCACACTGCAGGAGGGAAAGGTTATTTTGACGCGCACGC
CCTGGCTATGGACTATCGGAGTTTGGGGTTTCGGGAATGCCTGGCCGAAGTTGCCCGTTATCTGAGCATC
ATTGAAGGACTCGATGCCTCCGACCCGCTTCGCGTTCGCCTGGTCTCCCATCTCAACAACTACGCATCCC
AGCGGGAAGCCGCGAGCGGCGCTCACGGTGGCCTCGGACACATTCCCTGGGGAAGTGCCTTCGGACATCA
CCCACACATCGCACACCCTCTGCTGCTGCCCCAGAATGGCCACGGGAACGCTGGCACCGCGGCGTCACCC
ACGGAGCCGCATCACCAGGGCAGGCTGGCTTCTGCCCATCCGGAGGCGCCGGCCTTGCGAGCGCCCCCTA
GTGGCGGCTTGGGACCGGTGCTTCCCGTGGTGACCTCGGCCTCCAAACTGTCTCCACCGCTGCTCTCCTC
TGTGGCCTCGCTCTCAGCCTTCCCCTTTTCCTTCAGCTCCTTCCACCTACTGAGCCCTTCGACACCCACG
CAGGCAGCAAACCTTGGCAAGCCCTATAGACCTTGGGGGACAGAGATCGGAGCTTTCTAA

Translation (299 aa):
MKRAHPDYSSSDSELDETIEVEKESADENGNLSSALCSMSPTTSSQVLARKRRRGIIEKRRRDRINNSLS
ELRRLVPSAFEKQGSAKLEKAEILQMTVDHLKMLHTAGGKGYFDAHALAMDYRSLGFRECLAEVARYLSI
IEGLDASDPLRVRLVSHLNNYASQREAASGAHGGLGHIPWGSAFGHHPHIAHPLLLPQNGHGNAGTAASP
TEPHHQGRLASAHPEAPALRAPPSGGLGPVLPVVTSASKLSPPLLSSVASLSAFPFSFSSFHLLSPSTPT
QAANLGKPYRPWGTEIGAF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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