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Report for CCDS17179.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17179.1 Public Mus musculus 2 Ogfr 23 108 98 CCDS HistoryNCBI Gene:72075Re-query CCDS DB by CCDS ID:17179.1Re-query CCDS DB by GeneID:72075See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17179.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029087.3 ENSMUSP00000029087.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029087.3Link to Ensembl Protein Viewer:ENSMUSP00000029087.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000029087Re-query CCDS DB by Protein ID:ENSMUSP00000029087
Original member Current member NCBI NM_031373.3 NP_113550.3 Accepted alive Link to Nucleotide Sequence:NM_031373.3Link to Protein Sequence:NP_113550.3Re-query CCDS DB by Nucleotide ID:NM_031373Re-query CCDS DB by Protein ID:NP_113550Link to BLAST:NP_113550.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_113550.3 633 Q99PG2-1 633 100% 0 0

Chromosomal Locations for CCDS 17179.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 180589481 180589621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 180590987 180591055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 180591617 180591695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 180592427 180592505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 180593104 180593170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 180593570 180593718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 180594208 180595525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1902 nt):
ATGGACGACCCGGAATGCGATTCCACCTGGGAGGACGAGAGCGAGGAGGACGGCGAGGATGGCCAGGCGG
ATGATACGACCGATGAGGACACGGGCGACGATGACGGCGACGCGGAGGAGGCACGGCCAAGCCTGTTCCA
GTCTAGGATGACAAGGTACCGAAACTGGCGTGCTATGCAGGACATGCAAAGATACCGGCACAACTACCCG
GATTTGACAGATCAAGACTGCAACGGAGACATGTGCAACCTGAGCTTCTACAAAAATGAGATCTGCTTCC
AGCCAAATGGCTTTCTCATTGAGGACATTCTTCAGAACTGGAAAGACAACTATGACCTCCTGGAAGAGAA
TCACTCCTACATCCAGTGGCTGTTTCCCCTGAGGGAACCAGGAGTGAACTGGCATGCCAAGCCCCTCACA
CTGAAGGAGGTTGAGGCATTTAAAAGCTCCAAGGAAGTCAGAGAGCGTCTTGTCCGGGCCTATGAGCTCA
TGCTGGGCTTCTATGGGATCCAACTTGAGGACCGGAACACAGGCGCCGTATGCCGTGCACAGAACTTCCA
GCCACGCTTCCACAATCTCAACAGCCACAGCCACAACAATCTGCGTATTACACGCATCCTCAAGTCGCTG
GGCGAGCTGGGCTTAGAGCACTACCAGGCACCGCTGGTGCGCTTCTTCCTGGAGGAGACCCTAGTACAGC
ACAAACTGCCCAGCGTTCGCCAGAGTGCCCTGGACTACTTCCTGTTTGCCGTGCGCTGCCGGCACCAGCG
CCGGGAGCTCGTGCACTTTGCTTGGGAGCACTTCAAGCCTCGCCGAGAGTTTGTCTGGGGGCCCCGTGAC
AAGCTGCGGAGGTTCAGGCCCCAGACTATATCCCGGCCACTGATGGGACTAGGGCAGGCAGATAAAGATG
AGGGCCCCGGGGACCCCTCCCAAGAGGCTGGCACCCAGGGTCGGACCTGTGGATCTGGAAGGGACCTGAG
TGGGGACAGTGGAACAGCTGAGGATCTCTCACTGTTGAGCGCAAAACCCCAGGATGTGGGAACCTTGGAT
GGGGACCAAAGGCATGAGGCTAAGTCCCCGAGTCCCAAAGAAAGCAAGAAGAGGAAGTTGGAGGGGAACA
GGCAGGAGCAGGTCCCAGGGGAGCCAGATCCTCAGGGTGTCTCTGAGGTAGAGAAAATTGCCCTCAACCT
TGAGGGGTGTGCCCTCAGCCCTACCAGCCAGGAGCCCAGGGAGGCTGAACAGCCCTGTCTTGTGGCTAGG
GTGGCTAATGAGGTAAGAAAACGGAGGAAGGTGGAGGAAGGAGCTGAGGGTGATGGAGTAGCCAGTAACA
CTCAAGTGCAGGCCAGTGCCCTGTCTCCTACCCCTTCAGAGTGTCCTGAGTCCCAAAAGGATGGGAATGG
GCCAGAGGACCCCAAAAGCCAGGTGGGGCCAGAAGACCCCAAAAGCCAGGTGGGGCCAGAGGACCCCAAA
AGCCAGGTGGGGCCAGAGGACCCCAAAAGCCAGGTGGGGCCAGAGGACCCAAAAGGCCAGGTGGAGCCAG
AGGACCCAAAAGGCCAGGTGGGGCCAGAAGACCCAAAAGGCCAGGTGGGGCCAGAGGACCCAAAAGGCCA
GGTGGGGCCAGAGGACCCCAAAAGCCAGGTGGGGCCAGAGGACCCCAAAAGCCAGGTGGAGCCAGAGGAC
CCCAAAAGCCAGGTGGAGCCAGAGGACCCCAAAAGCCAGGTGGAGCCAGAGGACCCCAAAAGCCAGGTGG
GGCCAGAGGACCCCCAAAGCCAGGTGGGGCCAGAGCAAGCTGCCTCTAAGAGCCTGGGGGAGGATCCTGA
CTCTGACACTACAGGAACCTCAATGAGTGAGTCAGAGGAGTTGGCAAGGATTGAGGCCTCTGTTGAACCC
CCAAAGCCTTAG

Translation (633 aa):
MDDPECDSTWEDESEEDGEDGQADDTTDEDTGDDDGDAEEARPSLFQSRMTRYRNWRAMQDMQRYRHNYP
DLTDQDCNGDMCNLSFYKNEICFQPNGFLIEDILQNWKDNYDLLEENHSYIQWLFPLREPGVNWHAKPLT
LKEVEAFKSSKEVRERLVRAYELMLGFYGIQLEDRNTGAVCRAQNFQPRFHNLNSHSHNNLRITRILKSL
GELGLEHYQAPLVRFFLEETLVQHKLPSVRQSALDYFLFAVRCRHQRRELVHFAWEHFKPRREFVWGPRD
KLRRFRPQTISRPLMGLGQADKDEGPGDPSQEAGTQGRTCGSGRDLSGDSGTAEDLSLLSAKPQDVGTLD
GDQRHEAKSPSPKESKKRKLEGNRQEQVPGEPDPQGVSEVEKIALNLEGCALSPTSQEPREAEQPCLVAR
VANEVRKRRKVEEGAEGDGVASNTQVQASALSPTPSECPESQKDGNGPEDPKSQVGPEDPKSQVGPEDPK
SQVGPEDPKSQVGPEDPKGQVEPEDPKGQVGPEDPKGQVGPEDPKGQVGPEDPKSQVGPEDPKSQVEPED
PKSQVEPEDPKSQVEPEDPKSQVGPEDPQSQVGPEQAASKSLGEDPDSDTTGTSMSESEELARIEASVEP
PKP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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