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Report for CCDS171.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
171.1 Public Homo sapiens 1 CPLANE2 24 110 108 CCDS HistoryNCBI Gene:79363Re-query CCDS DB by CCDS ID:171.1Re-query CCDS DB by GeneID:79363See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 171.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000375599.8 ENSP00000364749.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000375599.8Link to Ensembl Protein Viewer:ENSP00000364749.2Re-query CCDS DB by Nucleotide ID:ENST00000375599Re-query CCDS DB by Protein ID:ENSP00000364749
Original member Current member NCBI NM_030907.4 NP_112169.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_030907.4Link to Protein Sequence:NP_112169.2Re-query CCDS DB by Nucleotide ID:NM_030907Re-query CCDS DB by Protein ID:NP_112169Link to BLAST:NP_112169.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_112169.2 258 Q9BU20 258 100% 0 0

Chromosomal Locations for CCDS 171.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 16232048 16232297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16232510 16232646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16232893 16233017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16233612 16233764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16236631 16236742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (777 nt):
ATGGCCAGACCTCCCGTGCCCGGTTCGGTGGTTGTCCCAAACTGGCACGAGAGTGCCGAGGGCAAGGAGT
ACCTGGCTTGCATTCTGCGCAAGAACCGCCGGCGGGTGTTTGGGCTGCTTGAGCGGCCAGTGCTGCTGCC
GCCTGTGTCCATTGACACTGCCAGCTACAAGATCTTTGTGTCCGGGAAGAGTGGTGTGGGCAAGACGGCG
CTGGTGGCCAAGCTGGCTGGCCTGGAGGTGCCTGTGGTGCACCACGAGACCACCGGCATCCAGACCACCG
TGGTATTTTGGCCAGCCAAGCTGCAGGCCAGCAGCCGTGTCGTCATGTTTCGTTTTGAGTTCTGGGACTG
TGGAGAGTCTGCACTCAAAAAGTTCGATCATATGCTGCTGGCTTGCATGGAGAACACAGATGCCTTCCTC
TTCCTCTTCTCCTTCACTGACCGTGCCTCCTTTGAAGACCTCCCTGGACAGCTGGCCCGCATAGCAGGTG
AGGCCCCTGGTGTCGTCAGGATGGTCATCGGCTCCAAATTTGACCAGTACATGCACACGGACGTGCCCGA
GCGGGACCTCACAGCCTTCCGGCAGGCCTGGGAGCTGCCCCTGCTACGGGTGAAGAGTGTGCCGGGGCGG
CGGCTGGCTGATGGGCGCACACTGGACGGGCGGGCTGGGCTGGCCGACGTTGCCCACATACTCAATGGCC
TTGCTGAGCAGCTGTGGCACCAGGACCAGGTGGCGGCTGGCCTGCTTCCCAACCCCCCAGAGAGTGCTCC
TGAATGA

Translation (258 aa):
MARPPVPGSVVVPNWHESAEGKEYLACILRKNRRRVFGLLERPVLLPPVSIDTASYKIFVSGKSGVGKTA
LVAKLAGLEVPVVHHETTGIQTTVVFWPAKLQASSRVVMFRFEFWDCGESALKKFDHMLLACMENTDAFL
FLFSFTDRASFEDLPGQLARIAGEAPGVVRMVIGSKFDQYMHTDVPERDLTAFRQAWELPLLRVKSVPGR
RLADGRTLDGRAGLADVAHILNGLAEQLWHQDQVAAGLLPNPPESAPE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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