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Report for CCDS17092.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17092.1 Public Mus musculus 2 Cse1l 23 108 98 CCDS HistoryNCBI Gene:110750Re-query CCDS DB by CCDS ID:17092.1Re-query CCDS DB by GeneID:110750See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17092.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000002790.13 ENSMUSP00000002790.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000002790.13Link to Ensembl Protein Viewer:ENSMUSP00000002790.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000002790Re-query CCDS DB by Protein ID:ENSMUSP00000002790
Original member Current member NCBI NM_023565.3 NP_076054.1 Accepted alive Link to Nucleotide Sequence:NM_023565.3Link to Protein Sequence:NP_076054.1Re-query CCDS DB by Nucleotide ID:NM_023565Re-query CCDS DB by Protein ID:NP_076054Link to BLAST:NP_076054.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_076054.1 971 Q9ERK4 971 100% 0 0

Chromosomal Locations for CCDS 17092.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 166915180 166915264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 166919613 166919755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 166921970 166922071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 166922155 166922300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 166922754 166922844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 166926351 166926458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 166927244 166927336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 166927443 166927610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 166927713 166927842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 166928958 166929023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 166929785 166929987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 166930582 166930666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 166932133 166932194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 166934753 166934889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 166935923 166936026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 166937342 166937439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 166939635 166939785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 166939910 166940118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 166941218 166941315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 166941407 166941492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 166942015 166942096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 166943060 166943206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 166944377 166944608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 166945704 166945793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2916 nt):
ATGGAGCTCAGCGATGCGAATTTACAGACACTAACAGAGTATTTAAAGAAAACCCTGGATCCTGATCCTG
CCATTAGACGGCCAGCTGAGAAGTTTCTCGAATCCGTAGAAGGAAATCAGAATTACCCACTGTTGCTTTT
AACATTATTGGAAAAGTCACAGGATAATGTCATTAAAGTATGTGCTTCAGTAACCTTCAAGAACTATATT
AAAAGGAATTGGAGAATTGTTGAAGATGAACCAAACAAAATTTGCGAAGCTGATCGAGTAGCTATTAAAG
CCAACATAGTGCATCTGATGCTGAGCAGTCCAGAGCAGATTCAGAAGCAGCTGAGTGATGCTATTAGCAT
CATTGGCAGAGAAGATTTCCCTCAGAAATGGCCTGACTTGTTGACAGAAATGGTGAATCGCTTTCAGAGT
GGAGATTTTCACGTCATTAATGGAGTCCTTCGTACAGCGCACTCACTATTTAAGAGATACCGGCATGAGT
TCAAGTCAAATGAGCTGTGGACTGAAATTAAACTTGTCTTGGATGCCTTTGCTTTGCCTTTGACTAATCT
ATTCAAGGCCACCATTGAACTGTGCAGTACCCATGCAAATGACGCCTCTGCCCTGAGGATTCTTTTTTCT
TCCTTGATTTTGATCTCAAAATTGTTCTATAGTTTGAACTTTCAGGATCTCCCTGAATTCTTTGAAGATA
ATATGGAAACTTGGATGAACAATTTTCATACCCTCCTGACACTGGATAATAAGCTCTTGCAGACTGATGA
TGAAGAGGAAGCAGGCTTACTGGAGCTTTTAAAGTCTCAGATCTGTGATAATGCCGCTCTCTATGCACAG
AAATATGACGAAGAGTTTCAGCGGTACCTCCCTCGCTTTGTCACAGCTATCTGGAACTTACTCGTTACAA
CAGGGCGAGAAGTTAAATATGACTTGTTGGTTAGCAATGCAATTCAGTTTCTGGCTTCAGTTTGTGAAAG
GCCACATTATAAGAATCTGTTTGAGGACCAGAACACGCTGACAAGTATCTGTGAAAAAGTTATTGTGCCT
AACATGGAATTTAGAGCTGCTGATGAAGAAGCTTTTGAAGATAATTCTGAGGAGTACATACGGAGGGATT
TGGAAGGCTCTGATATTGATACTAGACGCAGGGCTGCTTGTGATCTTGTACGAGGATTATGCAAATTTTT
TGAAGGTCCTGTGACAGGAATCTTCTCTGGTTATGTTAATTCCATGCTCCAGGAGTATGCAAAAAACCCG
TCTGTCAACTGGAAACACAAAGATGCAGCTATTTACCTTGTCACATCTTTGGCATCAAAAGCCCAGACAC
AGAAGCATGGAATCACGCAAGCCAATGAACTTGTAAACCTAACTGAATTTTTCGTGAATCACATACTTCC
TGATTTAAAATCAAATAATGTGAATGAGTTTCCTGTGCTTAAAGCTGATGGTATCAAATATATTATGATT
TTTAGGAATCAAGTACCAAAAGAGCACCTCCTAGTCTCTATTCCCCTCTTGATCAGTCACCTGGAGGCTG
AGAGTATTGTCGTCCACACTTATGCCGCACATGCTCTCGAAAGGCTGTTCACTATGAGAGGGTCAAACAA
TACCACTCTTTTTACAGCTGCAGAAATCGCACCGTTTGTTGAGATTCTGCTAACAAACCTTTTCAAAGCT
CTCACACTTCCTGGCTCTTCAGAAAATGAATATATTATGAAAGCTATCATGAGAAGTTTCTCCCTCCTGC
AAGAGGCCATCATCCCCTATATCCCCACTCTCATCACGCAGCTCACACAGAAGCTGCTGGCTGTTAGTAA
GAATCCCAGTAAACCTCATTTCAATCACTACATGTTTGAAGCAATATGCTTGTCTATAAGAATAACCTGC
AAAGCTAACCCTGCTGCTGTTGTGAATTTTGAGGAGGCTCTGTTTCTAGTGTTCACTGAGATCTTACAAA
ATGATGTACAAGAGTTTATCCCATATGTCTTTCAAGTGATGTCTTTACTTCTGGAAACACATAAAAATGA
TATCCCGTCTTCCTATATGGCCTTGTTTCCCCACCTCCTTCAGCCAGTACTGTGGGAAAGGACAGGAAAC
ATCCCTGCTCTAGTGAGGCTGCTCCAGGCATTCTTAGAACGAGGCTCAAGTACAATAGCAACTGCTGCAG
CTGACAAAATTCCTGGATTACTGGGTGTCTTCCAGAAGCTGATTGCATCCAAGGCAAACGATCACCAAGG
TTTCTATCTTCTCAACAGTATAATCGAACACATGCCTCCTGAATCAGTTGACCAGTATAGGAAGCAGATC
TTCATTCTACTATTCCAGAGACTGCAAAACTCCAAGACCACCAAGTTTATCAAGAGTTTCTTAGTGTTTA
TTAACTTATATTGCATTAAGTATGGGGCACTAGCATTACAAGAAATATTTGATGGCATACAACCAAAAAT
GTTTGGAATGGTTTTGGAAAAAATCATTATTCCAGAGATTCAAAAGGTATCTGGGAACGTGGAGAAAAAA
ATCTGTGCAGTTGGCATAACCAAATTACTCACAGAGTGTCCACCAATGATGGACACGGAGTACACTAAGC
TGTGGACTCCTTTGTTACAATCTCTCATTGGCCTGTTTGAATTACCTGAAGATGACAGCATTCCTGATGA
AGAGCATTTCATTGACATAGAAGATACACCAGGATACCAGACTGCCTTCTCACAGCTGGCATTTGCTGGT
AAAAAGGAACATGATCCTGTAGGTCAGATGGTAAACAACCCCAAAATCCATCTGGCACAGTCACTTCACA
AACTGTCAACTGCTTGTCCTGGAAGGGTTCCCTCGATGGTGAGCACCAGCCTCAATGCAGAAGCCTTGCA
GTATCTCCAAGGTTACCTGCAGGCAGCCAGTGTGACCCTGTTGTGA

Translation (971 aa):
MELSDANLQTLTEYLKKTLDPDPAIRRPAEKFLESVEGNQNYPLLLLTLLEKSQDNVIKVCASVTFKNYI
KRNWRIVEDEPNKICEADRVAIKANIVHLMLSSPEQIQKQLSDAISIIGREDFPQKWPDLLTEMVNRFQS
GDFHVINGVLRTAHSLFKRYRHEFKSNELWTEIKLVLDAFALPLTNLFKATIELCSTHANDASALRILFS
SLILISKLFYSLNFQDLPEFFEDNMETWMNNFHTLLTLDNKLLQTDDEEEAGLLELLKSQICDNAALYAQ
KYDEEFQRYLPRFVTAIWNLLVTTGREVKYDLLVSNAIQFLASVCERPHYKNLFEDQNTLTSICEKVIVP
NMEFRAADEEAFEDNSEEYIRRDLEGSDIDTRRRAACDLVRGLCKFFEGPVTGIFSGYVNSMLQEYAKNP
SVNWKHKDAAIYLVTSLASKAQTQKHGITQANELVNLTEFFVNHILPDLKSNNVNEFPVLKADGIKYIMI
FRNQVPKEHLLVSIPLLISHLEAESIVVHTYAAHALERLFTMRGSNNTTLFTAAEIAPFVEILLTNLFKA
LTLPGSSENEYIMKAIMRSFSLLQEAIIPYIPTLITQLTQKLLAVSKNPSKPHFNHYMFEAICLSIRITC
KANPAAVVNFEEALFLVFTEILQNDVQEFIPYVFQVMSLLLETHKNDIPSSYMALFPHLLQPVLWERTGN
IPALVRLLQAFLERGSSTIATAAADKIPGLLGVFQKLIASKANDHQGFYLLNSIIEHMPPESVDQYRKQI
FILLFQRLQNSKTTKFIKSFLVFINLYCIKYGALALQEIFDGIQPKMFGMVLEKIIIPEIQKVSGNVEKK
ICAVGITKLLTECPPMMDTEYTKLWTPLLQSLIGLFELPEDDSIPDEEHFIDIEDTPGYQTAFSQLAFAG
KKEHDPVGQMVNNPKIHLAQSLHKLSTACPGRVPSMVSTSLNAEALQYLQGYLQAASVTLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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