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Report for CCDS17068.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17068.1 Public Mus musculus 2 Ncoa5 23 108 98 CCDS HistoryNCBI Gene:228869Re-query CCDS DB by CCDS ID:17068.1Re-query CCDS DB by GeneID:228869See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17068.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000040381.14 ENSMUSP00000046388.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000040381.14Link to Ensembl Protein Viewer:ENSMUSP00000046388.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000040381Re-query CCDS DB by Protein ID:ENSMUSP00000046388
Original member Current member NCBI NM_144892.1 NP_659141.1 Accepted alive Link to Nucleotide Sequence:NM_144892.1Link to Protein Sequence:NP_659141.1Re-query CCDS DB by Nucleotide ID:NM_144892Re-query CCDS DB by Protein ID:NP_659141Link to BLAST:NP_659141.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_659141.1 579 Q91W39 579 100% 0 0

Chromosomal Locations for CCDS 17068.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 165001582 165002171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 165002639 165002959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 165004097 165004296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 165009323 165009449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 165010451 165010587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 165012836 165013162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 165023146 165023183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1740 nt):
ATGAATACGGCTCCATCAAGACCCAGCCCCACACGAAGGGATCCCTATAGCTTTGGAGATAGTCGCGATA
CAAGGCGTGATCGCTCTCCAATTCGAGGAAGTCCAAGGAGAGAACCCAGGGATGGCAGAAATGGCCGGGA
TGCCCGTGATAGCAGAGACATTCGAGATCCTCGGGATTTGCGGGACCGCAGAGACAGCAGGGACATTCGG
GATCACAGAGACAGCAGAAGTGTACGTGAAGCCCGGGACCTGAGGGATTTTCGGGACTTTCGTGATCTAA
GAGACTCTAGAGATTTTCGAGATCATCGAGACCCTGTGTATGACAGATACAGAGATATAAGAGATTCCAG
AGACCCTTTGTACAGGAGAGAAGGCTCATATGACCGTTATCTGAGGGTGGATGACTATTGCCGGAGGAAG
GATGACTCGTACTTTGACCGGTACAGAGATAGCTTTGATGGACGGGGCCCTCCTGGCCCAGAGAGTCAAT
CTCGAGCAAAAGAGCGTTTGAAACGTGAGGAACGACGTAGAGAGGAGCTTTATCGTCGGTATTTTGAGGA
GATCCAGCGACGCTTTGATGCTGAGAGGCCTGTGGATTGCTCAGTTATTGTGGTCAACAAACAGACTAAA
GACTATGCTGAGTCTGTGGGGAGGAAGGTGCGAGACCTGGGCATGGTCGTGGACCTGATCTTCCTCAACA
CAGAGGTGTCCCTCTCACAAGCGCTGGAGGATGTCAGCAGAGGAGGCTCTCCCTTCGCCATTGTCATCAC
CCAGCAGCACCAGATTCACCGTTCCTGCACAGTCAACATCATGTTCGGAACACCACAAGAGCATCGCAAC
ATGCCCCAGGCAGATGCCATGGTGCTGGTGGCCAGAAATTACGAGCGCTACAAGAATGACTGTCGAGAAA
AGGAACGTGAGGAGATTGCCCGACAGGCAGCCAAAATGGCTAATGACGCCATCCTCCAGGAAAGAGATCG
TGGGGGCCCTGAAGAGGGAGGTCGTGGAGGGCACCCTCCAGCTATCCAGAGCCTCATCAACCTCCTGGCA
GATAACAGATACCTCACTGCCGAGGAGACGGACAAGATCATCAACTACCTGCGCGAGCGGAAGGAGCGGC
TCCTGAGGAGCAGCGCCGACTCTCTGCCTGGCCCGATTTCCCGCCAGCCACTCGGGGCGGCCTCGGGTTC
CTCGCTGAAGTCACAACCAAGTTCACAACCGCTTCAGAGCGGCCAAGTGCTCCCTTCTGCTACACCCACT
CCAGCCGCACCCCCCACCTCCCAGCAAGAGCTTCAGGCCAAAATCCTCAGCCTCTTCAATAGTGGCGCGG
TTGCGGCCAACAGCAGCTCTGCATCCCCCTCAGTGGCTACCGGAAGCTCCCAGAACCAGAATTTTTCCAC
AGCAGCAAACAGCCAGCCTCAGCAAAGACCGCAGGCCTCAGGAAATCAGCCTCCAAACATTGTGGGACAG
GCAGGGTCTGCTCGGAACATGGGCCCTAGGCCTGGGGCTCCTTCCCAAGGGCTCTTTGGTCAGCCTTCCA
GTCGCCTGGCACCCGCCAGCACCATGGCTAGCCAGAGGCCTGTATCTTCCACAGGTATTAACTTTGACAA
TCCAAGTGTACAAAAGGCTCTGGACACCCTGATTCAGAGTGGCCCTGCCCTTTCCCACCTGGTTAGCCAA
ACTGCAGCACAGGTGGGGCGGCCCCAGGCCCCCATGGGATCTTACCAGAGGCATTACTGA

Translation (579 aa):
MNTAPSRPSPTRRDPYSFGDSRDTRRDRSPIRGSPRREPRDGRNGRDARDSRDIRDPRDLRDRRDSRDIR
DHRDSRSVREARDLRDFRDFRDLRDSRDFRDHRDPVYDRYRDIRDSRDPLYRREGSYDRYLRVDDYCRRK
DDSYFDRYRDSFDGRGPPGPESQSRAKERLKREERRREELYRRYFEEIQRRFDAERPVDCSVIVVNKQTK
DYAESVGRKVRDLGMVVDLIFLNTEVSLSQALEDVSRGGSPFAIVITQQHQIHRSCTVNIMFGTPQEHRN
MPQADAMVLVARNYERYKNDCREKEREEIARQAAKMANDAILQERDRGGPEEGGRGGHPPAIQSLINLLA
DNRYLTAEETDKIINYLRERKERLLRSSADSLPGPISRQPLGAASGSSLKSQPSSQPLQSGQVLPSATPT
PAAPPTSQQELQAKILSLFNSGAVAANSSSASPSVATGSSQNQNFSTAANSQPQQRPQASGNQPPNIVGQ
AGSARNMGPRPGAPSQGLFGQPSSRLAPASTMASQRPVSSTGINFDNPSVQKALDTLIQSGPALSHLVSQ
TAAQVGRPQAPMGSYQRHY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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