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Report for CCDS1692.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1692.1 Public Homo sapiens 2 KCNS3 24 110 108 CCDS HistoryNCBI Gene:3790Re-query CCDS DB by CCDS ID:1692.1Re-query CCDS DB by GeneID:3790See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1692.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000304101.9 ENSP00000305824.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000304101.9Link to Ensembl Protein Viewer:ENSP00000305824.4Re-query CCDS DB by Nucleotide ID:ENST00000304101Re-query CCDS DB by Protein ID:ENSP00000305824
Original member Current member EBI ENST00000403915.5 ENSP00000385968.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000403915.5Link to Ensembl Protein Viewer:ENSP00000385968.1Re-query CCDS DB by Nucleotide ID:ENST00000403915Re-query CCDS DB by Protein ID:ENSP00000385968
Original member Current member NCBI NM_001282428.2 NP_001269357.1 Accepted alive Link to Nucleotide Sequence:NM_001282428.2Link to Protein Sequence:NP_001269357.1Re-query CCDS DB by Nucleotide ID:NM_001282428Re-query CCDS DB by Protein ID:NP_001269357Link to BLAST:NP_001269357.1
Original member Current member NCBI NM_002252.5 NP_002243.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002252.5Link to Protein Sequence:NP_002243.3Re-query CCDS DB by Nucleotide ID:NM_002252Re-query CCDS DB by Protein ID:NP_002243Link to BLAST:NP_002243.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001269357.1 491 Q9BQ31 491 100% 0 0
NP_002243.3 491 Q9BQ31 491 100% 0 0

Chromosomal Locations for CCDS 1692.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 17931009 17932484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1476 nt):
ATGGTGTTTGGTGAGTTTTTCCATCGCCCTGGACAAGACGAGGAACTTGTCAACCTGAATGTGGGGGGCT
TTAAGCAGTCTGTTGACCAAAGCACCCTCCTGCGGTTTCCTCACACCAGACTGGGGAAGCTGCTTACTTG
CCATTCTGAAGAGGCCATTCTGGAGCTGTGTGATGATTACAGTGTGGCCGATAAGGAGTACTACTTTGAT
CGGAATCCCTCCTTGTTCAGATATGTTTTGAATTTTTATTACACGGGGAAGCTGCATGTCATGGAGGAGC
TGTGCGTATTCTCATTCTGCCAGGAGATCGAGTACTGGGGCATCAACGAGCTCTTCATTGATTCTTGCTG
CAGCAATCGCTACCAGGAACGCAAGGAGGAAAACCACGAGAAGGACTGGGACCAGAAAAGCCATGATGTG
AGTACCGACTCCTCGTTTGAAGAGTCGTCTCTGTTTGAGAAAGAGCTGGAGAAGTTTGACACACTGCGAT
TTGGTCAGCTCCGGAAGAAAATCTGGATTAGAATGGAGAATCCAGCGTACTGCCTGTCCGCTAAGCTTAT
CGCTATCTCCTCCTTGAGCGTGGTGCTGGCCTCCATCGTGGCCATGTGCGTTCACAGCATGTCGGAGTTC
CAGAATGAGGATGGAGAAGTGGATGATCCGGTGCTGGAAGGAGTGGAGATCGCGTGCATTGCCTGGTTCA
CCGGGGAGCTTGCCGTCCGGCTGGCTGCCGCTCCTTGTCAAAAGAAATTCTGGAAAAACCCTCTGAACAT
CATTGACTTTGTCTCTATTATTCCCTTCTATGCCACGTTGGCTGTAGACACCAAGGAGGAAGAGAGTGAG
GATATTGAGAACATGGGCAAGGTGGTCCAGATCCTACGGCTTATGAGGATTTTCCGAATTCTAAAGCTTG
CCCGGCACTCGGTAGGACTTCGGTCTCTAGGTGCCACACTGAGACACAGCTACCATGAAGTTGGGCTTCT
GCTTCTCTTCCTCTCTGTGGGCATTTCCATTTTCTCTGTGCTTATCTACTCCGTGGAGAAAGATGACCAC
ACATCCAGCCTCACCAGCATCCCCATCTGCTGGTGGTGGGCCACCATCAGCATGACAACTGTGGGCTATG
GAGACACCCACCCGGTCACCTTGGCGGGAAAGCTCATCGCCAGCACATGCATCATCTGTGGCATCTTGGT
GGTGGCCCTTCCCATCACCATCATCTTCAACAAGTTTTCCAAGTACTACCAGAAGCAAAAGGACATTGAT
GTGGACCAGTGCAGTGAGGATGCACCAGAGAAGTGTCATGAGCTACCTTACTTTAACATTAGGGATATAT
ATGCACAGCGGATGCACACCTTCATTACCAGTCTCTCTTCTGTAGGCATTGTGGTGAGCGATCCTGACTC
CACAGATGCTTCAAGCATTGAAGACAATGAGGACATTTGTAACACCACCTCCTTGGAGAATTGCACAGCA
AAATGA

Translation (491 aa):
MVFGEFFHRPGQDEELVNLNVGGFKQSVDQSTLLRFPHTRLGKLLTCHSEEAILELCDDYSVADKEYYFD
RNPSLFRYVLNFYYTGKLHVMEELCVFSFCQEIEYWGINELFIDSCCSNRYQERKEENHEKDWDQKSHDV
STDSSFEESSLFEKELEKFDTLRFGQLRKKIWIRMENPAYCLSAKLIAISSLSVVLASIVAMCVHSMSEF
QNEDGEVDDPVLEGVEIACIAWFTGELAVRLAAAPCQKKFWKNPLNIIDFVSIIPFYATLAVDTKEEESE
DIENMGKVVQILRLMRIFRILKLARHSVGLRSLGATLRHSYHEVGLLLLFLSVGISIFSVLIYSVEKDDH
TSSLTSIPICWWWATISMTTVGYGDTHPVTLAGKLIASTCIICGILVVALPITIIFNKFSKYYQKQKDID
VDQCSEDAPEKCHELPYFNIRDIYAQRMHTFITSLSSVGIVVSDPDSTDASSIEDNEDICNTTSLENCTA
K


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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