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Report for CCDS1690.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1690.1 Public Homo sapiens 2 SMC6 24 110 108 CCDS HistoryNCBI Gene:79677Re-query CCDS DB by CCDS ID:1690.1Re-query CCDS DB by GeneID:79677See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1690.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000351948.8 ENSP00000323439.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000351948.8Link to Ensembl Protein Viewer:ENSP00000323439.4Re-query CCDS DB by Nucleotide ID:ENST00000351948Re-query CCDS DB by Protein ID:ENSP00000323439
Original member Current member EBI ENST00000402989.5 ENSP00000384539.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000402989.5Link to Ensembl Protein Viewer:ENSP00000384539.1Re-query CCDS DB by Nucleotide ID:ENST00000402989Re-query CCDS DB by Protein ID:ENSP00000384539
Original member Current member EBI ENST00000448223.7 ENSP00000404092.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000448223.7Link to Ensembl Protein Viewer:ENSP00000404092.2Re-query CCDS DB by Nucleotide ID:ENST00000448223Re-query CCDS DB by Protein ID:ENSP00000404092
Original member Current member NCBI NM_001142286.2 NP_001135758.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001142286.2Link to Protein Sequence:NP_001135758.1Re-query CCDS DB by Nucleotide ID:NM_001142286Re-query CCDS DB by Protein ID:NP_001135758Link to BLAST:NP_001135758.1
Original member Current member NCBI NM_024624.6 NP_078900.1 Accepted alive Link to Nucleotide Sequence:NM_024624.6Link to Protein Sequence:NP_078900.1Re-query CCDS DB by Nucleotide ID:NM_024624Re-query CCDS DB by Protein ID:NP_078900Link to BLAST:NP_078900.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001135758.1 1091 Q96SB8-1 1091 100% 0 0
NP_078900.1 1091 Q96SB8-1 1091 100% 0 0

Chromosomal Locations for CCDS 1690.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 17665499 17665613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 17666420 17666517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 17670423 17670575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 17678859 17678964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 17683638 17683763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 17695152 17695297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 17696289 17696426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 17700208 17700378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 17701829 17701909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 17703157 17703292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 17707219 17707379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 17708639 17708753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 17714861 17715065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 17716086 17716264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 17716741 17716905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 17717088 17717176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 17718077 17718223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 17720940 17721038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 17721142 17721261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 17725257 17725358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 17726389 17726469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 17731078 17731139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 17731741 17731877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 17738221 17738326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 17741612 17741729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 17745827 17745946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3276 nt):
ATGGCCAAAAGAAAGGAAGAAAATTTTTCCTCTCCTAAAAATGCCAAAAGGCCAAGACAAGAAGAATTGG
AGGATTTTGATAAAGATGGTGACGAAGACGAATGTAAAGGTACTACTTTGACTGCAGCAGAAGTTGGAAT
AATTGAGAGTATTCACCTAAAAAACTTCATGTGTCATTCAATGCTTGGACCTTTTAAGTTTGGTTCTAAT
GTCAACTTTGTTGTTGGCAACAATGGAAGTGGGAAGAGTGCAGTACTCACAGCTCTCATAGTCGGTCTTG
GTGGAAGAGCAGTTGCTACTAATAGAGGATCCTCTTTAAAAGGTTTTGTGAAAGATGGACAGAACTCTGC
AGATATCTCAATAACATTGAGGAACAGAGGAGATGATGCCTTTAAAGCCAGTGTGTATGGTAACTCTATA
CTTATACAGCAACACATCAGCATAGATGGAAGTCGATCTTATAAACTTAAAAGTGCAACAGGCTCCGTGG
TTTCCACGAGGAAAGAAGAGCTGATTGCAATTCTTGATCATTTTAACATCCAGGTGGATAATCCAGTTTC
TGTTTTAACACAAGAAATGAGCAAGCAGTTCTTACAGTCTAAAAATGAAGGAGACAAATACAAATTCTTC
ATGAAAGCAACGCAACTTGAACAGATGAAGGAAGATTATTCATACATTATGGAAACGAAAGAAAGAACAA
AGGAGCAGATACATCAAGGAGAAGAGCGGCTTACTGAACTAAAGCGCCAGTGTGTAGAGAAAGAGGAACG
TTTTCAAAGTATTGCTGGTTTAAGTACAATGAAGACTAATTTAGAGTCCTTGAAACATGAAATGGCTTGG
GCAGTGGTCAATGAAATTGAAAAACAATTGAATGCCATCAGAGATAATATCAAAATTGGAGAAGATCGTG
CTGCTAGACTTGACAGGAAAATGGAAGAACAGCAGGTCAGACTTAATGAGGCAGAACAAAAGTACAAGGA
TATTCAAGACAAACTAGAAAAGATTAGTGAAGAGACAAATGCACGAGCACCAGAATGTATGGCATTGAAA
GCAGATGTTGTTGCTAAGAAAAGGGCCTATAATGAAGCTGAGGTTTTATATAACCGATCCTTAAACGAAT
ATAAAGCATTAAAGAAAGATGATGAGCAGCTTTGTAAACGAATTGAAGAGCTGAAAAAAAGTACTGACCA
ATCTTTGGAACCTGAACGGTTGGAAAGACAAAAAAAAATATCTTGGTTAAAAGAGAGAGTAAAGGCCTTT
CAAAATCAAGAAAATTCAGTCAATCAAGAGATCGAACAGTTTCAGCAAGCCATAGAAAAGGACAAAGAAG
AACATGGCAAAATTAAGAGAGAAGAATTAGATGTGAAGCATGCACTGAGCTACAATCAGAGGCAACTGAA
AGAATTGAAAGATAGTAAAACTGATCGACTCAAAAGATTTGGCCCTAATGTTCCAGCTCTTCTTGAAGCC
ATAGATGATGCTTATAGACAAGGACATTTTACCTATAAACCTGTAGGCCCTTTAGGAGCTTGCATTCATC
TTCGGGACCCAGAACTTGCTTTGGCTATTGAATCTTGCTTAAAAGGGCTTCTGCAGGCCTATTGTTGCCA
TAATCATGCTGATGAAAGGGTCCTTCAGGCACTCATGAAAAGGTTTTATTTACCAGGGACCTCACGGCCA
CCGATAATAGTTTCTGAGTTTCGGAATGAGATATATGATGTAAGACACAGAGCTGCTTATCATCCAGACT
TTCCAACAGTTCTGACAGCTTTAGAAATAGATAATGCGGTTGTGGCAAATAGCCTAATTGACATGAGAGG
CATAGAGACAGTGCTACTAATCAAAAATAATTCTGTAGCTCGTGCAGTAATGCAGTCCCAAAAGCCACCC
AAAAATTGTAGAGAAGCTTTTACTGCTGATGGTGATCAAGTTTTTGCAGGACGTTATTATTCATCTGAAA
ATACAAGACCTAAGTTCCTAAGCAGAGATGTGGATTCTGAAATAAGTGACTTGGAGAATGAGGTTGAAAA
TAAGACGGCCCAGATATTAAATCTTCAGCAACATTTATCTGCCCTTGAAAAAGATATTAAACACAATGAG
GAACTTCTTAAAAGGTGCCAACTACATTATAAAGAACTAAAGATGAAAATAAGAAAAAATATTTCTGAAA
TTCGGGAACTTGAGAACATAGAAGAACACCAGTCTGTAGATATTGCAACTTTGGAAGATGAAGCTCAGGA
AAATAAAAGCAAAATGAAAATGGTTGAGGAACATATGGAGCAACAAAAAGAAAATATGGAGCATCTTAAA
AGTCTGAAAATAGAAGCAGAAAATAAGTATGATGCAATTAAATTCAAAATTAATCAACTATCGGAGCTAG
CAGACCCACTTAAGGATGAATTAAACCTTGCTGATTCTGAAGTGGATAACCAAAAACGAGGGAAACGACA
TTATGAAGAAAAACAAAAAGAACACTTGGATACCTTAAATAAAAAGAAACGAGAACTGGATATGAAAGAG
AAAGAACTAGAGGAGAAAATGTCACAAGCAAGACAAATCTGCCCAGAGCGTATAGAAGTAGAAAAATCTG
CATCAATTCTGGACAAAGAAATTAATCGATTAAGGCAGAAGATACAGGCAGAACATGCTAGTCATGGAGA
TCGAGAGGAAATAATGAGGCAGTACCAAGAAGCAAGAGAGACCTATCTTGATCTGGATAGTAAAGTGAGG
ACTTTAAAAAAGTTTATTAAATTACTGGGAGAAATCATGGAGCACAGATTCAAGACATATCAACAATTTA
GAAGGTGTTTGACTTTACGATGCAAATTATACTTTGACAACTTACTATCTCAGCGGGCCTATTGTGGAAA
AATGAATTTTGACCACAAGAATGAAACTCTAAGTATATCAGTTCAGCCTGGAGAAGGAAATAAAGCTGCT
TTCAATGACATGAGAGCCTTGTCTGGAGGTGAACGTTCTTTCTCCACAGTGTGTTTTATTCTTTCCCTGT
GGTCCATCGCAGAATCTCCTTTCAGATGCCTGGATGAATTTGATGTCTACATGGATATGGTTAATAGGAG
AATTGCCATGGACTTGATACTGAAGATGGCAGATTCCCAGCGTTTTAGACAGTTTATCTTGCTCACACCT
CAAAGCATGAGTTCACTTCCATCCAGTAAACTGATAAGAATTCTCCGAATGTCTGATCCTGAAAGAGGAC
AAACTACATTGCCTTTCAGACCTGTGACTCAAGAAGAAGATGATGACCAAAGGTGA

Translation (1091 aa):
MAKRKEENFSSPKNAKRPRQEELEDFDKDGDEDECKGTTLTAAEVGIIESIHLKNFMCHSMLGPFKFGSN
VNFVVGNNGSGKSAVLTALIVGLGGRAVATNRGSSLKGFVKDGQNSADISITLRNRGDDAFKASVYGNSI
LIQQHISIDGSRSYKLKSATGSVVSTRKEELIAILDHFNIQVDNPVSVLTQEMSKQFLQSKNEGDKYKFF
MKATQLEQMKEDYSYIMETKERTKEQIHQGEERLTELKRQCVEKEERFQSIAGLSTMKTNLESLKHEMAW
AVVNEIEKQLNAIRDNIKIGEDRAARLDRKMEEQQVRLNEAEQKYKDIQDKLEKISEETNARAPECMALK
ADVVAKKRAYNEAEVLYNRSLNEYKALKKDDEQLCKRIEELKKSTDQSLEPERLERQKKISWLKERVKAF
QNQENSVNQEIEQFQQAIEKDKEEHGKIKREELDVKHALSYNQRQLKELKDSKTDRLKRFGPNVPALLEA
IDDAYRQGHFTYKPVGPLGACIHLRDPELALAIESCLKGLLQAYCCHNHADERVLQALMKRFYLPGTSRP
PIIVSEFRNEIYDVRHRAAYHPDFPTVLTALEIDNAVVANSLIDMRGIETVLLIKNNSVARAVMQSQKPP
KNCREAFTADGDQVFAGRYYSSENTRPKFLSRDVDSEISDLENEVENKTAQILNLQQHLSALEKDIKHNE
ELLKRCQLHYKELKMKIRKNISEIRELENIEEHQSVDIATLEDEAQENKSKMKMVEEHMEQQKENMEHLK
SLKIEAENKYDAIKFKINQLSELADPLKDELNLADSEVDNQKRGKRHYEEKQKEHLDTLNKKKRELDMKE
KELEEKMSQARQICPERIEVEKSASILDKEINRLRQKIQAEHASHGDREEIMRQYQEARETYLDLDSKVR
TLKKFIKLLGEIMEHRFKTYQQFRRCLTLRCKLYFDNLLSQRAYCGKMNFDHKNETLSISVQPGEGNKAA
FNDMRALSGGERSFSTVCFILSLWSIAESPFRCLDEFDVYMDMVNRRIAMDLILKMADSQRFRQFILLTP
QSMSSLPSSKLIRILRMSDPERGQTTLPFRPVTQEEDDDQR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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