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Report for CCDS16815.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16815.1 Public Mus musculus 2 Snx5 23 108 98 CCDS HistoryNCBI Gene:69178Re-query CCDS DB by CCDS ID:16815.1Re-query CCDS DB by GeneID:69178See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16815.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028909.4 ENSMUSP00000028909.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028909.4Link to Ensembl Protein Viewer:ENSMUSP00000028909.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000028909Re-query CCDS DB by Protein ID:ENSMUSP00000028909
Original member Current member EBI ENSMUST00000110030.9 ENSMUSP00000105657.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110030.9Link to Ensembl Protein Viewer:ENSMUSP00000105657.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000110030Re-query CCDS DB by Protein ID:ENSMUSP00000105657
Original member NCBI NM_001199188.1 NP_001186117.1 Updated not alive Link to Nucleotide Sequence:NM_001199188.1Link to Protein Sequence:NP_001186117.1Re-query CCDS DB by Nucleotide ID:NM_001199188Re-query CCDS DB by Protein ID:NP_001186117
Current member NCBI NM_001199188.2 NP_001186117.1 Accepted alive Link to Nucleotide Sequence:NM_001199188.2Link to Protein Sequence:NP_001186117.1Re-query CCDS DB by Nucleotide ID:NM_001199188Re-query CCDS DB by Protein ID:NP_001186117Link to BLAST:NP_001186117.1
Original member NCBI NM_024225.5 NP_077187.1 Updated not alive Link to Nucleotide Sequence:NM_024225.5Link to Protein Sequence:NP_077187.1Re-query CCDS DB by Nucleotide ID:NM_024225Re-query CCDS DB by Protein ID:NP_077187
Current member NCBI NM_024225.6 NP_077187.1 Accepted alive Link to Nucleotide Sequence:NM_024225.6Link to Protein Sequence:NP_077187.1Re-query CCDS DB by Nucleotide ID:NM_024225Re-query CCDS DB by Protein ID:NP_077187Link to BLAST:NP_077187.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001186117.1 404 Q9D8U8 404 100% 0 0
NP_077187.1 404 Q9D8U8 404 100% 0 0

Chromosomal Locations for CCDS 16815.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 144251182 144251232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 144252445 144252530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 144253662 144253821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 144254726 144254812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 144254903 144254942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 144255340 144255415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 144255499 144255604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 144257100 144257195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 144257870 144257993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 144259057 144259178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 144260725 144260835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 144261920 144262024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 144270377 144270427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1215 nt):
ATGGCCGCGGTTCCCGAGTTGCTGGAGCAGCAGGAGGAGGACCGCAGCAAGTTAAGATCTGTGTCTGTGG
ACCTGAATGTTGACCCATCGCTTCAGATCGACATACCTGATGCACTCAGTGAGAGAGATAAGGTCAAGTT
TACAGTGCACACCAAGACCACACTGTCCACATTTCAGAGCCCAGAGTTTTCTGTTACAAGGCAACATGAA
GACTTTGTGTGGCTGCATGACACTCTTACTGAAACAACGGATTATGCTGGCCTTATTATCCCTCCTGCTC
CTACAAAGCCAGACTTTGATGGCCCTCGAGAGAAGATGCAGAAACTGGGAGAAGGGGAAGGATCTATGAC
AAAAGAAGAGTTTGCCAAGATGAAGCAAGAACTGGAAGCTGAGTATCTCGCTGTCTTTAAGAAGACTGTG
TCCACCCATGAAGTCTTTCTTCAGCGGCTTTCTTCTCACCCTGTTCTCAGTAAAGACCGCAACTTTCATG
TTTTCTTGGAATATGATCAGGATCTAAGTGTTAGACGGAAGAATACCAAGGAGATGTTTGGAGGCTTTTT
TAAAAGTGTGGTGAAGAGCGCCGATGAGGTCCTTTTTTCTGGAGTTAAGGAGGTGGATGACTTCTTTGAG
CAAGAGAAGAATTTCCTTATTAACTATTACAACAGGATCAAGGATTCCTGTGCTAAAGCAGACAAAATGA
CCAGATCTCACAAAAATGTTGCTGACGACTATATCCACACTGCAGCCTGCTTGCATAGCCTGGCCTTGGA
AGAACCCACAGTCATCAAAAAGTACCTGTTGAAAGTTGCAGAGCTATTTGAAAAACTTAGGAAAGTGGAA
GGTCGAGTCTCATCAGATGAAGACTTAAAACTGACAGAGCTCCTCCGATACTACATGCTCAACATAGAGG
CTGCAAAGGATCTCTTGTATAGACGTACCAAAGCCCTAATTGACTATGAGAATTCAAACAAAGCTTTGGA
CAAGGCCCGGTTAAAAAGCAAAGATGTCAAGTTGGCAGAGACTCATCAGCAGGAATGCTGCCAGAAGTTT
GAACAGCTTTCTGAATCTGCAAAAGAAGAGCTGATAAACTTCAAACGGAAGAGAGTGGCAGCATTTCGAA
AGAACCTAATCGAAATGTCTGAACTGGAAATAAAGCATGCCAGAAACAACGTCTCCCTGTTGCAGAGCTG
CATCGACTTATTCAAGAACAACTGA

Translation (404 aa):
MAAVPELLEQQEEDRSKLRSVSVDLNVDPSLQIDIPDALSERDKVKFTVHTKTTLSTFQSPEFSVTRQHE
DFVWLHDTLTETTDYAGLIIPPAPTKPDFDGPREKMQKLGEGEGSMTKEEFAKMKQELEAEYLAVFKKTV
STHEVFLQRLSSHPVLSKDRNFHVFLEYDQDLSVRRKNTKEMFGGFFKSVVKSADEVLFSGVKEVDDFFE
QEKNFLINYYNRIKDSCAKADKMTRSHKNVADDYIHTAACLHSLALEEPTVIKKYLLKVAELFEKLRKVE
GRVSSDEDLKLTELLRYYMLNIEAAKDLLYRRTKALIDYENSNKALDKARLKSKDVKLAETHQQECCQKF
EQLSESAKEELINFKRKRVAAFRKNLIEMSELEIKHARNNVSLLQSCIDLFKNN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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