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Report for CCDS1676.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1676.1 Public Homo sapiens 2 KCNF1 24 110 108 CCDS HistoryNCBI Gene:3754Re-query CCDS DB by CCDS ID:1676.1Re-query CCDS DB by GeneID:3754See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1676.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000295082.3 ENSP00000295082.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000295082.3Link to Ensembl Protein Viewer:ENSP00000295082.1Re-query CCDS DB by Nucleotide ID:ENST00000295082Re-query CCDS DB by Protein ID:ENSP00000295082
Original member Current member NCBI NM_002236.5 NP_002227.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002236.5Link to Protein Sequence:NP_002227.2Re-query CCDS DB by Nucleotide ID:NM_002236Re-query CCDS DB by Protein ID:NP_002227Link to BLAST:NP_002227.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_002227.2 494 Q9H3M0 494 100% 0 0

Chromosomal Locations for CCDS 1676.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 10912427 10913911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1485 nt):
ATGGACGGGTCCGGGGAGCGCAGCCTCCCGGAGCCGGGCAGCCAGAGCTCCGCTGCCAGCGACGACATAG
AGATAGTCGTCAACGTGGGGGGCGTGCGGCAGGTGCTGTACGGGGACCTCCTCAGTCAGTACCCTGAGAC
CCGGCTGGCGGAGCTCATCAACTGCTTGGCTGGGGGCTACGACACCATCTTCTCCCTGTGCGACGACTAC
GACCCCGGCAAGCGCGAGTTCTACTTTGACAGGGACCCGGACGCCTTCAAGTGTGTCATCGAGGTGTACT
ATTTCGGGGAGGTCCACATGAAGAAGGGCATCTGCCCCATCTGCTTCAAGAACGAGATGGACTTCTGGAA
GGTGGACCTCAAGTTCCTGGACGACTGTTGCAAGAGCCACCTGAGCGAGAAGCGCGAGGAGCTGGAGGAG
ATCGCGCGCCGCGTGCAGCTCATCCTGGACGACCTGGGCGTGGACGCAGCCGAGGGCCGCTGGCGCCGCT
GCCAGAAGTGCGTCTGGAAGTTCCTGGAGAAGCCCGAGTCGTCGTGCCCGGCGCGGGTGGTGGCCGTGCT
CTCCTTCCTGCTCATCCTCGTCTCGTCCGTGGTCATGTGCATGGGCACCATCCCCGAGCTGCAGGTGCTG
GACGCCGAGGGCAACCGCGTGGAGCACCCGACGCTGGAGAACGTGGAGACGGCGTGCATTGGCTGGTTCA
CCCTGGAGTACCTGCTGCGCCTCTTCTCGTCACCCAACAAGCTGCACTTCGCGCTGTCCTTCATGAACAT
TGTGGACGTGCTGGCCATCCTCCCCTTCTACGTGAGCCTCACGCTCACGCACCTGGGTGCCCGCATGATG
GAGCTGACCAACGTGCAGCAGGCCGTGCAGGCGCTGCGGATCATGCGCATCGCGCGCATCTTCAAGCTGG
CCCGCCACTCCTCGGGCCTGCAGACCCTCACCTATGCCCTCAAGCGCAGCTTCAAGGAACTGGGGCTGCT
GCTCATGTACCTGGCAGTGGGTATCTTCGTCTTCTCTGCCCTGGGCTACACCATGGAGCAGAGCCATCCA
GAGACCCTGTTTAAGAGCATCCCCCAGTCCTTCTGGTGGGCCATCATCACCATGACCACCGTCGGCTACG
GCGACATCTACCCCAAGACCACGCTGGGCAAGCTCAACGCGGCCATCAGCTTCTTGTGTGGTGTCATCGC
CATCGCCCTGCCCATCCACCCCATCATCAACAACTTTGTCAGGTACTACAACAAGCAGCGCGTCCTGGAG
ACCGCGGCCAAGCACGAGCTGGAGCTGATGGAACTCAACTCCAGCAGCGGGGGCGAGGGCAAGACCGGGG
GCTCCCGCAGTGACCTGGACAACCTCCCTCCAGAGCCTGCGGGGAAGGAGGCGCCGAGCTGCAGCAGCCG
GCTGAAGCTCTCCCACAGCGACACCTTCATCCCCCTCCTGACCGAGGAGAAGCACCACAGGACCCGGCTC
CAGAGTTGCAAGTGA

Translation (494 aa):
MDGSGERSLPEPGSQSSAASDDIEIVVNVGGVRQVLYGDLLSQYPETRLAELINCLAGGYDTIFSLCDDY
DPGKREFYFDRDPDAFKCVIEVYYFGEVHMKKGICPICFKNEMDFWKVDLKFLDDCCKSHLSEKREELEE
IARRVQLILDDLGVDAAEGRWRRCQKCVWKFLEKPESSCPARVVAVLSFLLILVSSVVMCMGTIPELQVL
DAEGNRVEHPTLENVETACIGWFTLEYLLRLFSSPNKLHFALSFMNIVDVLAILPFYVSLTLTHLGARMM
ELTNVQQAVQALRIMRIARIFKLARHSSGLQTLTYALKRSFKELGLLLMYLAVGIFVFSALGYTMEQSHP
ETLFKSIPQSFWWAIITMTTVGYGDIYPKTTLGKLNAAISFLCGVIAIALPIHPIINNFVRYYNKQRVLE
TAAKHELELMELNSSSGGEGKTGGSRSDLDNLPPEPAGKEAPSCSSRLKLSHSDTFIPLLTEEKHHRTRL
QSCK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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