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Report for CCDS16754.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16754.2 Public Mus musculus 2 Siglec1 23 108 98 CCDS HistoryNCBI Gene:20612Re-query CCDS DB by CCDS ID:16754.2Re-query CCDS DB by GeneID:20612See the combined annotation on chromosome 2 in Sequence Viewer

Public Note for CCDS 16754.2
An upstream translation start codon is selected for this CCDS. The use of an alternative upstream start codon, which appears to be mouse-specific, would result in a protein that is 6 aa longer at the N-terminal.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 16754.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028794.9 ENSMUSP00000028794.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028794.9Link to Ensembl Protein Viewer:ENSMUSP00000028794.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000028794Re-query CCDS DB by Protein ID:ENSMUSP00000028794
Original member Current member NCBI NM_011426.3 NP_035556.3 Accepted alive Link to Nucleotide Sequence:NM_011426.3Link to Protein Sequence:NP_035556.3Re-query CCDS DB by Nucleotide ID:NM_011426Re-query CCDS DB by Protein ID:NP_035556Link to BLAST:NP_035556.3

Chromosomal Locations for CCDS 16754.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 131069852 131069875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 131070339 131070411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 131070739 131070841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 131071089 131071391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 131072592 131072852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 131073328 131073633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 131073905 131074156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 131074245 131074514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 131074820 131075071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 131075694 131076005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 131076113 131076373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 131077921 131078223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 131078497 131078754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 131079122 131079442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 131080347 131080604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 131081275 131081574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 131083291 131083545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 131083791 131084057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 131084915 131085214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 131085458 131085817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 131086050 131086116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5106 nt):
ATGCACCTGGGCACTGGGATGTGTGTCCTGTTCTCCCTGCTCCTGCTGGCCTCTGTCTTCTCACTAGGCC
AGACCACATGGGGTGTCTCCAGTCCCAAGAATGTGCAGGGCTTGTCGGGATCCTGCCTGCTCATTCCCTG
CATCTTCAGCTACCCTGCCGATGTCCCAGTGTCCAATGGCATCACAGCCATCTGGTACTATGACTACTCG
GGCAAGCGGCAGGTGGTAATCCACTCAGGGGACCCCAAGCTGGTGGACAAGCGTTTCAGGGGTCGAGCTG
AACTGATGGGGAACATGGACCACAAGGTGTGCAACCTGTTGCTCAAAGACTTGAAGCCTGAAGACTCTGG
CACCTACAACTTCCGCTTTGAGATCAGTGATAGCAACCGCTGGTTAGATGTCAAAGGCACCACGGTCACT
GTGACAACGGATCCCAGCCCCCCCACTATTACCATTCCTGAGGAGCTGCGTGAAGGCATGGAGAGGAACT
TCAACTGTTCCACACCCTACCTGTGCCTGCAGGAGAAGCAAGTCAGCCTGCAGTGGCGAGGCCAGGACCC
CACCCACTCTGTCACCTCCAGCTTCCAGAGCCTCGAGCCCACTGGCGTCTATCACCAGACGACCCTACAT
ATGGCCCTATCCTGGCAGGACCACGGTCGGACCCTGCTCTGCCAGTTCTCATTGGGCGCACACAGTAGTC
GGAAAGAGGTTTACCTGCAAGTGCCACATGCCCCCAAAGGTGTGGAGATCCTCCTCAGCTCCTCAGGGAG
GAACATCCTTCCCGGGGATCCAGTCACACTCACCTGCAGAGTGAACAGCAGCTATCCTGCTGTCAGTGCC
GTGCAGTGGGCCAGGGACGGAGTGAACCTCGGAGTCACGGGACATGTGCTTCGGCTGTTCTCAGCAGCCT
GGAATGATTCTGGGGCCTACACCTGCCAAGCAACAAATGATATGGGCTCTCTGGTGTCATCCCCGCTCAG
CCTCCATGTTTTTATGGCTGAAGTCAAAATGAACCCCGCAGGGCCCGTCTTGGAAAATGAGACAGTGACT
CTGCTCTGTAGCACGCCGAAGGAGGCTCCCCAGGAGCTCCGCTATAGCTGGTACAAGAACCACATTCTCC
TGGAAGATGCCCATGCCTCAACCTTGCACCTGCCTGCAGTCACCAGGGCTGATACTGGCTTCTACTTCTG
TGAAGTGCAGAATGCCCAGGGCAGTGAGCGCTCCAGTCCATTGAGTGTGGTGGTCAGATATCCACCCCTT
ACTCCAGACCTGACCACCTTCCTGGAGACACAGGCCGGACTTGTGGGCATCTTGCATTGCTCCGTGGTCA
GTGAGCCCCTGGCTACTGTGGTGCTGTCACACGGAGGCCTCACGTTGGCCTCCAACTCTGGAGAAAATGA
CTTCAACCCCCGATTCAGGATCTCCTCTGCCCCCAACTCCCTGCGCCTAGAAATCCGAGACTTGCAGCCA
GCAGACAGCGGAGAGTACACATGCTTAGCTGTCAACTCCCTTGGAAACTCAACGTCCAGCCTAGACTTCT
ATGCTAATGTGGCCCGACTCCTCATCAACCCTTCAGCAGAGGTTGTGGAAGGGCAGGCGGTGACCCTGAG
CTGCAGGAGTGGCCTGAGCCCAGCTCCTGACACTCGCTTCTCCTGGTACCTGAACGGAGCTCTACTTCTG
GAAGGATCCAGCAGCAGCCTCCTGCTTCCTGCGGCTTCCAGCACTGATGCGGGCTCATACTACTGTAGGA
CGCAGGCTGGCCCCAACACCAGCGGCCCCTCCCTGCCTACTGTCCTCACTGTGTTCTATCCCCCAAGAAA
GCCCACATTCACTGCCAGGCTGGATTTGGATACCTCTGGAGTCGGGGATGGACGACGGGGCATCCTCTTG
TGCCACGTAGACAGCGATCCCCCAGCCCAGCTACGGCTTCTCCACAAAGGCCATGTTGTGGCCACTTCTC
TGCCATCAAGGTGTGGGAGCTGTTCCCAGCGCACAAAAGTCAGCAGAACCTCCAACTCACTGCACGTGGA
GATCCAGAAGCCTGTATTAGAGGATGAGGGCGTGTACCTGTGTGAGGCTAGCAACACATTGGGCAACTCC
TCAGCCGCAGCCTCTTTCAATGCTAAGGCCACTGTACTGGTCATCACACCGTCAAATACACTGCGTGAAG
GCACAGAGGCCAACCTAACTTGCAACGTGAACCAGGAGGTTGCTGTCAGCCCTGCCAACTTCTCCTGGTT
CCGGAATGGAGTGCTGTGGACCCAGGGATCACTGGAGACTGTGAGGCTGCAGCCTGTGGCCAGAACTGAT
GCTGCTGTCTATGCCTGCCGCCTCCTCACCGAGGATGGGGCTCAGCTCTCGGCTCCTGTGGTCCTAAGTG
TGCTGTATGCCCCAGACCCTCCAAAGCTGTCAGCCCTCCTAGATGTGGGTCAGGGCCACATGGCCGTGTT
CATCTGCACTGTGGACAGCTATCCCCTGGCTCACCTGTCTCTGTTCCGTGGGGACCATCTCCTGGCCACC
AACTTGGAACCCCAGCGTCCCTCCCATGGCAGGATCCAGGCCAAGGCCACAGCCAACTCCCTGCAGCTAG
AGGTCCGAGAACTAGGTCTTGTGGACTCTGGAAACTACCACTGTGAAGCCACCAATATTCTTGGGTCAGC
CAACAGTTCACTCTTCTTCCAGGTCAGAGGAGCCTGGGTCCAGGTTTCACCATCACCTGAGCTCCGGGAG
GGCCAGGCTGTGGTCCTGAGCTGCCAGGTGCCCACAGGAGTCTCTGAGGGGACCTCATACAGCTGGTATC
AGGATGGCCGCCCCCTCCAGGAGTCAACCTCATCTACACTCCGCATTGCAGCCATAAGTCTGAGGCAAGC
TGGTGCCTACCATTGCCAAGCTCAGGCCCCAGACACAGCTATTGCCAGCCTGGCTGCCCCTGTCAGCCTC
CATGTGTCCTATACCCCACGTCATGTTACACTCAGTGCCCTGCTGAGCACGGACCCTGAGCGACTAGGCC
ACCTGGTGTGCAGTGTACAAAGTGACCCTCCAGCGCAGCTGCAACTGTTTCACCGGAATCGCCTCGTGGC
CTCTACCCTACAAGGCGCGGACGAATTGGCAGGCAGTAATCCCCGGCTGCATGTGACTGTGCTCCCCAAT
GAGCTGCGCCTGCAGATCCACTTTCCAGAGCTGGAGGATGACGGGACCTATACATGCGAAGCCAGCAACA
CACTGGGCCAGGCCTCGGCTGCAGCTGACTTCGATGCCCAGGCTGTGCGAGTGACTGTGTGGCCCAATGC
CACTGTGCAAGAGGGGCAGCAGGTGAACCTGACCTGCTTGGTGTGGAGCACCCACCAGGACTCACTCAGC
TACACATGGTACAAGGGCGGGCAACAACTCCTTGGTGCCAGATCCATCACCCTGCCCAGTGTTAAGGTTT
TGGATGCTACCTCCTACCGCTGTGGTGTGGGGCTCCCCGGCCACGCACCCCATCTCTCCAGACCCGTGAC
CCTGGATGTCCTCCATGCTCCCCGAAACCTGCGGCTGACCTACCTCCTAGAGACCCAGGGCAGGCAGCTG
GCCCTGGTACTGTGTACGGTGGATAGTCGTCCACCTGCCCAGCTAACTCTCAGCCATGGTGACCAGCTTG
TAGCCTCCTCAACTGAAGCCTCTGTCCCCAACACCCTGCGCCTAGAGCTTCAGGATCCAAGGCCTAGTAA
TGAGGGGCTCTATAGCTGCTCTGCCCACAGCCCATTGGGCAAGGCCAACACGTCCCTGGAACTTCTGCTG
GAAGGTGTCCGAGTGAAAATGAATCCCTCTGGTAGTGTACCCGAGGGAGAGCCTGTCACAGTGACCTGCG
AGGACCCTGCTGCCCTCTCATCCGCCCTCTATGCCTGGTTTCACAATGGCCATTGGCTTCAGGAGGGACC
GGCTTCCTCACTCCAGTTCCTGGTGACTACACGGGCTCACGCTGGTGCTTACTTTTGCCAGGTGCATGAT
ACACAAGGCACACGGAGCTCCAGACCTGCCAGCCTGCAAATTCTCTATGCCCCCCGGGATGCTGTCCTGT
CTTCCTTTCGAGACTCAAGGACCAGGCTCATGGTCGTGATTCAGTGCACCGTGGACAGTGAGCCACCTGC
TGAGATGGTCCTATCCCACAATGGCAAGGTGCTAGCTGCCAGCCACGAGCGTCACAGCTCAGCATCAGGG
ATAGGCCACATCCAGGTAGCCCGAAATGCTCTTCGACTACAAGTGCAAGATGTGACTCTGGGTGATGGCA
ACACCTATGTTTGCACAGCCCAGAATACACTGGGCTCCATCAGTACCACCCAGAGGCTTCTGACGGAGAC
TGATATACGTGTGACAGCTGAGCCAGGCTTGGATGTGCCAGAGGGCACAGCTCTGAACTTAAGCTGCCTC
CTCCCTGGTGGCTCTGGGCCCACGGGCAACTCTTCCTTCACGTGGTTCTGGAATCGCCACCGACTACATT
CAGCTCCTGTGCCCACACTCTCCTTCACCCCTGTGGTCCGGGCTCAGGCTGGGCTGTACCACTGCAGGGC
TGATCTCCCCACCGGGGCCACTACCTCTGCTCCAGTTATGCTCCGTGTCCTCTATCCCCCCAAGACGCCC
ACTCTCATAGTGTTTGTGGAGCCTCAGGGTGGCCACCAGGGCATCCTCGACTGTCGAGTGGACAGTGAGC
CCCTGGCCATCCTCACTCTTCACCGGGGCAGTCAACTAGTAGCCTCCAACCAACTTCACGATGCTCCCAC
CAAGCCCCACATCCGAGTCACTGCTCCTCCCAATGCCTTGAGAGTGGACATAGAGGAGCTCGGCCCTAGC
AATCAAGGGGAGTATGTGTGCACTGCCTCCAACACTCTGGGCTCTGCCTCAGCCTCTGCCTACTTTGGGA
CCAGAGCTCTGCACCAACTGCAGCTGTTCCAGAGGCTGCTCTGGGTCCTGGGATTTCTGGCAGGCTTCCT
GTGCCTGCTGCTGGGTCTGGTGGCCTATCACACCTGGAGAAAGAAGAGTTCTACCAAGCTGAATGAGGAT
GAGAATTCAGCAGAGATGGCCACTAAGAAAAATACTATCCAGGAGGAAGTGGTTGCTGCTCTCTGA

Translation (1701 aa):
MHLGTGMCVLFSLLLLASVFSLGQTTWGVSSPKNVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYS
GKRQVVIHSGDPKLVDKRFRGRAELMGNMDHKVCNLLLKDLKPEDSGTYNFRFEISDSNRWLDVKGTTVT
VTTDPSPPTITIPEELREGMERNFNCSTPYLCLQEKQVSLQWRGQDPTHSVTSSFQSLEPTGVYHQTTLH
MALSWQDHGRTLLCQFSLGAHSSRKEVYLQVPHAPKGVEILLSSSGRNILPGDPVTLTCRVNSSYPAVSA
VQWARDGVNLGVTGHVLRLFSAAWNDSGAYTCQATNDMGSLVSSPLSLHVFMAEVKMNPAGPVLENETVT
LLCSTPKEAPQELRYSWYKNHILLEDAHASTLHLPAVTRADTGFYFCEVQNAQGSERSSPLSVVVRYPPL
TPDLTTFLETQAGLVGILHCSVVSEPLATVVLSHGGLTLASNSGENDFNPRFRISSAPNSLRLEIRDLQP
ADSGEYTCLAVNSLGNSTSSLDFYANVARLLINPSAEVVEGQAVTLSCRSGLSPAPDTRFSWYLNGALLL
EGSSSSLLLPAASSTDAGSYYCRTQAGPNTSGPSLPTVLTVFYPPRKPTFTARLDLDTSGVGDGRRGILL
CHVDSDPPAQLRLLHKGHVVATSLPSRCGSCSQRTKVSRTSNSLHVEIQKPVLEDEGVYLCEASNTLGNS
SAAASFNAKATVLVITPSNTLREGTEANLTCNVNQEVAVSPANFSWFRNGVLWTQGSLETVRLQPVARTD
AAVYACRLLTEDGAQLSAPVVLSVLYAPDPPKLSALLDVGQGHMAVFICTVDSYPLAHLSLFRGDHLLAT
NLEPQRPSHGRIQAKATANSLQLEVRELGLVDSGNYHCEATNILGSANSSLFFQVRGAWVQVSPSPELRE
GQAVVLSCQVPTGVSEGTSYSWYQDGRPLQESTSSTLRIAAISLRQAGAYHCQAQAPDTAIASLAAPVSL
HVSYTPRHVTLSALLSTDPERLGHLVCSVQSDPPAQLQLFHRNRLVASTLQGADELAGSNPRLHVTVLPN
ELRLQIHFPELEDDGTYTCEASNTLGQASAAADFDAQAVRVTVWPNATVQEGQQVNLTCLVWSTHQDSLS
YTWYKGGQQLLGARSITLPSVKVLDATSYRCGVGLPGHAPHLSRPVTLDVLHAPRNLRLTYLLETQGRQL
ALVLCTVDSRPPAQLTLSHGDQLVASSTEASVPNTLRLELQDPRPSNEGLYSCSAHSPLGKANTSLELLL
EGVRVKMNPSGSVPEGEPVTVTCEDPAALSSALYAWFHNGHWLQEGPASSLQFLVTTRAHAGAYFCQVHD
TQGTRSSRPASLQILYAPRDAVLSSFRDSRTRLMVVIQCTVDSEPPAEMVLSHNGKVLAASHERHSSASG
IGHIQVARNALRLQVQDVTLGDGNTYVCTAQNTLGSISTTQRLLTETDIRVTAEPGLDVPEGTALNLSCL
LPGGSGPTGNSSFTWFWNRHRLHSAPVPTLSFTPVVRAQAGLYHCRADLPTGATTSAPVMLRVLYPPKTP
TLIVFVEPQGGHQGILDCRVDSEPLAILTLHRGSQLVASNQLHDAPTKPHIRVTAPPNALRVDIEELGPS
NQGEYVCTASNTLGSASASAYFGTRALHQLQLFQRLLWVLGFLAGFLCLLLGLVAYHTWRKKSSTKLNED
ENSAEMATKKNTIQEEVVAAL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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