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Report for CCDS16729.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16729.1 Public Mus musculus 2 Sirpa 23 108 98 CCDS HistoryNCBI Gene:19261Re-query CCDS DB by CCDS ID:16729.1Re-query CCDS DB by GeneID:19261See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16729.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000103202.9 ENSMUSP00000099491.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000103202.9Link to Ensembl Protein Viewer:ENSMUSP00000099491.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000103202Re-query CCDS DB by Protein ID:ENSMUSP00000099491
Original member Current member EBI ENSMUST00000103203.7 ENSMUSP00000099492.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000103203.7Link to Ensembl Protein Viewer:ENSMUSP00000099492.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000103203Re-query CCDS DB by Protein ID:ENSMUSP00000099492
Original member Current member EBI ENSMUST00000179001.7 ENSMUSP00000137611.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000179001.7Link to Ensembl Protein Viewer:ENSMUSP00000137611.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000179001Re-query CCDS DB by Protein ID:ENSMUSP00000137611
Original member NCBI NM_001355158.1 NP_001342087.1 Updated not alive Link to Nucleotide Sequence:NM_001355158.1Link to Protein Sequence:NP_001342087.1Re-query CCDS DB by Nucleotide ID:NM_001355158Re-query CCDS DB by Protein ID:NP_001342087
Current member NCBI NM_001355158.2 NP_001342087.1 Accepted alive Link to Nucleotide Sequence:NM_001355158.2Link to Protein Sequence:NP_001342087.1Re-query CCDS DB by Nucleotide ID:NM_001355158Re-query CCDS DB by Protein ID:NP_001342087Link to BLAST:NP_001342087.1
Original member NCBI NM_007547.4 NP_031573.2 Updated not alive Link to Nucleotide Sequence:NM_007547.4Link to Protein Sequence:NP_031573.2Re-query CCDS DB by Nucleotide ID:NM_007547Re-query CCDS DB by Protein ID:NP_031573
Current member NCBI NM_007547.5 NP_031573.2 Accepted alive Link to Nucleotide Sequence:NM_007547.5Link to Protein Sequence:NP_031573.2Re-query CCDS DB by Nucleotide ID:NM_007547Re-query CCDS DB by Protein ID:NP_031573Link to BLAST:NP_031573.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001342087.1 509 P97797-2 509 100% 0 0
NP_031573.2 509 P97797-2 509 100% 0 0

Chromosomal Locations for CCDS 16729.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 129593613 129593694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 129608904 129609260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 129615447 129615764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 129616223 129616558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 129618457 129618570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 129621203 129621227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 129627946 129627985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 129629927 129630184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1530 nt):
ATGGAGCCCGCCGGCCCGGCCCCTGGCCGCCTAGGGCCGCTGCTGCTCTGCCTGCTGCTCTCCGCGTCCT
GTTTCTGTACAGGAGCCACGGGGAAGGAACTGAAGGTGACTCAGCCTGAGAAATCAGTGTCTGTTGCTGC
TGGGGATTCGACCGTTCTGAACTGCACTTTGACCTCCTTGTTGCCGGTGGGACCCATTAGGTGGTACAGA
GGAGTAGGGCCAAGCCGGCTGTTGATCTACAGTTTCGCAGGAGAATACGTTCCTCGAATTAGAAATGTTT
CAGATACTACTAAGAGAAACAATATGGACTTTTCCATCCGTATCAGTAATGTCACCCCAGCAGATGCTGG
CATCTACTACTGTGTGAAGTTCCAGAAAGGATCATCAGAGCCTGACACAGAAATACAATCTGGAGGGGGA
ACAGAGGTCTATGTACTCGCCAAACCTTCTCCACCGGAGGTATCCGGCCCAGCAGACAGGGGCATACCTG
ACCAGAAAGTGAACTTCACCTGCAAGTCTCATGGCTTCTCTCCCCGGAATATCACCCTGAAGTGGTTCAA
AGATGGGCAAGAACTCCACCCCTTGGAGACCACCGTGAACCCTAGTGGAAAGAATGTCTCCTACAACATC
TCCAGCACAGTCAGGGTGGTACTAAACTCCATGGATGTTAATTCTAAGGTCATCTGCGAGGTAGCCCACA
TCACCTTGGATAGAAGCCCTCTTCGTGGGATTGCTAACCTGTCTAACTTCATCCGAGTTTCACCCACCGT
GAAGGTCACCCAACAGTCCCCGACGTCAATGAACCAGGTGAACCTCACCTGCCGGGCTGAGAGGTTCTAC
CCCGAGGATCTCCAGCTGATCTGGCTGGAGAATGGAAACGTATCACGGAATGACACGCCCAAGAATCTCA
CAAAGAACACGGATGGGACCTATAATTACACAAGCTTGTTCCTGGTGAACTCATCTGCTCATAGAGAGGA
CGTGGTGTTCACGTGCCAGGTGAAGCACGACCAACAGCCAGCGATCACCCGAAACCATACCGTGCTGGGA
TTTGCCCACTCGAGTGATCAAGGGAGCATGCAAACCTTCCCTGATAATAATGCTACCCACAACTGGAATG
TCTTCATCGGTGTGGGCGTGGCGTGTGCTTTGCTCGTAGTCCTGCTGATGGCTGCTCTCTACCTCCTCCG
GATCAAACAGAAGAAAGCCAAGGGGTCAACATCTTCCACACGGTTGCACGAGCCCGAGAAGAACGCCAGG
GAAATAACCCAGATCCAGGACACAAATGACATCAACGACATCACATACGCAGACCTGAATCTGCCCAAAG
AGAAGAAGCCCGCACCCCGGGCCCCTGAGCCTAACAACCACACAGAATATGCAAGCATTGAGACAGGCAA
AGTGCCTAGGCCAGAGGATACCCTCACCTATGCTGACCTGGACATGGTCCACCTCAGCCGGGCACAGCCA
GCCCCCAAGCCTGAGCCATCTTTCTCAGAGTATGCTAGTGTCCAGGTCCAGAGGAAGTGA

Translation (509 aa):
MEPAGPAPGRLGPLLLCLLLSASCFCTGATGKELKVTQPEKSVSVAAGDSTVLNCTLTSLLPVGPIRWYR
GVGPSRLLIYSFAGEYVPRIRNVSDTTKRNNMDFSIRISNVTPADAGIYYCVKFQKGSSEPDTEIQSGGG
TEVYVLAKPSPPEVSGPADRGIPDQKVNFTCKSHGFSPRNITLKWFKDGQELHPLETTVNPSGKNVSYNI
SSTVRVVLNSMDVNSKVICEVAHITLDRSPLRGIANLSNFIRVSPTVKVTQQSPTSMNQVNLTCRAERFY
PEDLQLIWLENGNVSRNDTPKNLTKNTDGTYNYTSLFLVNSSAHREDVVFTCQVKHDQQPAITRNHTVLG
FAHSSDQGSMQTFPDNNATHNWNVFIGVGVACALLVVLLMAALYLLRIKQKKAKGSTSSTRLHEPEKNAR
EITQIQDTNDINDITYADLNLPKEKKPAPRAPEPNNHTEYASIETGKVPRPEDTLTYADLDMVHLSRAQP
APKPEPSFSEYASVQVQRK


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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