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Report for CCDS16702.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16702.1 Public Mus musculus 2 Fahd2a 23 108 98 CCDS HistoryNCBI Gene:68126Re-query CCDS DB by CCDS ID:16702.1Re-query CCDS DB by GeneID:68126See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16702.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028848.3 ENSMUSP00000028848.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028848.3Link to Ensembl Protein Viewer:ENSMUSP00000028848.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000028848Re-query CCDS DB by Protein ID:ENSMUSP00000028848
Original member Current member NCBI NM_029629.2 NP_083905.1 Accepted alive Link to Nucleotide Sequence:NM_029629.2Link to Protein Sequence:NP_083905.1Re-query CCDS DB by Nucleotide ID:NM_029629Re-query CCDS DB by Protein ID:NP_083905Link to BLAST:NP_083905.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083905.1 313 Q3TC72 313 100% 0 0

Chromosomal Locations for CCDS 16702.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 127436344 127436406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127436546 127436633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127436737 127436845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127438113 127438272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127438510 127438569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127440386 127440602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127441874 127442118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (942 nt):
ATGCTGGGCTTTGGGAGGAGGAGGCTGTTCTCAGCTCTGCTGCAGGTTCAGAAGAGGCCCTGTCAACCCT
CCAGAAACATGAGACTGGTACAGTTCCAGGCACCTCACCTGGAAGAGCCTCACCTGGGTCTGGAGTCAGG
GGTTGGTGGGGGAGTTGTAGACTTAAATGCTTTTGACTCAACACTCCCTAAGACAATGGTGCAGTTCCTG
GAGCAAGGAGAGACCACCCTTTCAGTGGCAAGAAGAGCCCTGGCTACCCAGCTGCCTGTCATCCCTCGGT
CACAGGTGACCTTCTTGGCCCCTGTCACCCGGCCAGACAAGGTGATATGTGTGGGCTTGAATTATGCAGA
CCACTGCCAAGAACAGAATGTGCGGGTGCCCAAGAGCCCCATCATCTTCAGCAAGTTCTCCAGCTCTATC
GTGGGGCCCTACGATGAGATCATCCTCCCACCAGAGAGCAAGGAAGTTGACTGGGAGGTCGAGATGGCCG
TGGTCATTGGGAAGAAAGGCAAACACATCAAGGCCACAGATGTCATGGCTCACGTGGCTGGCTTCACTGT
GGCTCATGATGTGAGTGCTCGGGACTGGCAAATGAGAAATGGAAAGCAGTGGTTACTGGGAAAAACTTTT
GATACTTTCTGCCCCCTGGGCCCTGCCTTGGTTACCAAGGATACCATAGCAGATCCACACAATTTAAAGA
TCTGCTGTCGAGTGAATGGAGAGGTAGTCCAGAGCAGCAACACCAACCAGATGGTGTTCAAGACTGAATA
TCTGATAGCCTGGGTCTCCCAGTTTGTCACTCTTTACCCAGGGGACCTCCTCCTGACTGGGACGCCTCCA
GGTGTTGGCATGTTTAGGAAGCCTCCTGTCTTCCTCAAGAAGGGCGATGAAGTCCAGTGTGAGATTGAAG
AACTTGGTGTCATCATCAACAAGGTGGTGTGA

Translation (313 aa):
MLGFGRRRLFSALLQVQKRPCQPSRNMRLVQFQAPHLEEPHLGLESGVGGGVVDLNAFDSTLPKTMVQFL
EQGETTLSVARRALATQLPVIPRSQVTFLAPVTRPDKVICVGLNYADHCQEQNVRVPKSPIIFSKFSSSI
VGPYDEIILPPESKEVDWEVEMAVVIGKKGKHIKATDVMAHVAGFTVAHDVSARDWQMRNGKQWLLGKTF
DTFCPLGPALVTKDTIADPHNLKICCRVNGEVVQSSNTNQMVFKTEYLIAWVSQFVTLYPGDLLLTGTPP
GVGMFRKPPVFLKKGDEVQCEIEELGVIINKVV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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