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Report for CCDS16683.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16683.1 Public Mus musculus 2 Slc27a2 23 108 98 CCDS HistoryNCBI Gene:26458Re-query CCDS DB by CCDS ID:16683.1Re-query CCDS DB by GeneID:26458See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16683.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000061491.13 ENSMUSP00000057595.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000061491.13Link to Ensembl Protein Viewer:ENSMUSP00000057595.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000061491Re-query CCDS DB by Protein ID:ENSMUSP00000057595
Original member Current member NCBI NM_011978.2 NP_036108.2 Accepted alive Link to Nucleotide Sequence:NM_011978.2Link to Protein Sequence:NP_036108.2Re-query CCDS DB by Nucleotide ID:NM_011978Re-query CCDS DB by Protein ID:NP_036108Link to BLAST:NP_036108.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036108.2 620 O35488 620 100% 0 0

Chromosomal Locations for CCDS 16683.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 126553155 126553632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 126561537 126561746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 126564678 126564836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 126567747 126567871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 126574702 126574896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 126577860 126577950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 126578849 126579047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 126580906 126581003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 126586252 126586382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 126587760 126587936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1863 nt):
ATGCTGCCAGTGCTCTACACCGGCCTGGCGGGGCTGCTGCTGCTGCCTCTGCTGCTCACCTGCTGCTGCC
CCTACCTCCTCCAAGATGTGCGGTACTTCCTGCGGCTGGCCAACATGGCCCGGCGGGTGCGCAGCTACCG
GCAGCGGCGACCCGTGCGTACCATCCTGCGGGCCTTCCTGGAACAAGCGCGCAAGACCCCACACAAGCCC
TTCCTGCTGTTCCGAGACGAGACGCTCACCTACGCCCAGGTGGACCGGCGCAGCAACCAAGTGGCGCGGG
CGCTGCACGATCAACTGGGCCTACGACAGGGGGATTGCGTAGCCCTCTTCATGGGCAATGAGCCGGCCTA
CGTGTGGATCTGGCTGGGACTGCTCAAACTGGGCTGTCCCATGGCGTGCCTCAACTACAACATTCGTGCC
AAGTCTCTGCTGCACTGCTTTCAATGCTGCGGGGCGAAGGTGCTGCTGGCCTCCCCAGATCTACAAGAAG
CTGTGGAGGAGGTTCTTCCAACCCTGAAAAAGGATGCCGTGTCCGTCTTTTACGTAAGCAGAACTTCTAA
CACAAATGGTGTGGACACAATACTGGACAAAGTAGACGGAGTGTCGGCGGAACCCACCCCGGAGTCGTGG
AGGTCTGAAGTCACTTTTACCACGCCAGCAGTATACATTTATACTTCGGGAACCACAGGTCTTCCAAAAG
CGGCAACCATCAATCATCATCGCCTATGGTATGGGACAGGCCTTGCTATGTCGAGTGGAATCACGGCCCA
GGATGTCATCTATACCACAATGCCCCTGTACCACAGTGCAGCGCTCATGATCGGCCTTCACGGATGCATC
GTGGTTGGGGCTACTTTAGCTTTGCGGAGCAAATTCTCAGCCAGCCAGTTTTGGGACGACTGCAGGAAAT
ACAACGTCACGGTCATTCAGTACATTGGTGAACTGCTTCGGTACCTGTGCAACACACCGCAGAAACCAAA
TGACCGGGACCACAAAGTGAAAAAAGCCCTGGGAAATGGCTTACGAGGAGATGTGTGGAGAGAGTTCATC
AAGAGATTTGGGGACATCCACGTGTATGAGTTCTACGCATCCACTGAAGGCAACATTGGATTTGTGAACT
ATCCAAGGAAAATCGGTGCTGTCGGGAGAGCAAACTACCTACAAAGAAAAGTTGCAAGGTATGAGCTGAT
CAAGTATGACGTGGAGAAGGACGAGCCGGTCCGTGACGCAAATGGATATTGCATCAAAGTCCCCAAAGGT
GAGGTTGGACTCTTGGTTTGCAAAATCACACAGCTCACACCATTTATTGGCTATGCTGGAGGAAAGACCC
AGACAGAGAAGAAAAAACTCAGAGATGTCTTTAAGAAAGGCGACATCTACTTCAACAGCGGAGACCTCCT
GATGATCGACCGTGAGAACTTCGTCTACTTTCACGACAGGGTTGGAGATACTTTCCGGTGGAAAGGAGAG
AACGTAGCTACCACAGAAGTCGCTGACATCGTGGGACTGGTAGATTTTGTTGAAGAAGTGAATGTGTATG
GCGTGCCTGTGCCAGGTCATGAGGGTCGAATTGGGATGGCCTCCCTCAAGATCAAAGAAAACTACGAGTT
CAATGGAAAGAAACTCTTTCAACACATCGCGGAGTACCTGCCCAGTTACGCGAGGCCTCGGTTCCTGAGG
ATACAAGATACCATTGAGATCACTGGGACTTTTAAACACCGCAAAGTGACCCTGATGGAAGAGGGCTTCA
ATCCCACAGTCATCAAAGATACCTTGTATTTCATGGATGATGCAGAGAAAACATTTGTGCCCATGACTGA
GAACATTTATAATGCCATAATTGATAAAACTCTGAAGCTCTGA

Translation (620 aa):
MLPVLYTGLAGLLLLPLLLTCCCPYLLQDVRYFLRLANMARRVRSYRQRRPVRTILRAFLEQARKTPHKP
FLLFRDETLTYAQVDRRSNQVARALHDQLGLRQGDCVALFMGNEPAYVWIWLGLLKLGCPMACLNYNIRA
KSLLHCFQCCGAKVLLASPDLQEAVEEVLPTLKKDAVSVFYVSRTSNTNGVDTILDKVDGVSAEPTPESW
RSEVTFTTPAVYIYTSGTTGLPKAATINHHRLWYGTGLAMSSGITAQDVIYTTMPLYHSAALMIGLHGCI
VVGATLALRSKFSASQFWDDCRKYNVTVIQYIGELLRYLCNTPQKPNDRDHKVKKALGNGLRGDVWREFI
KRFGDIHVYEFYASTEGNIGFVNYPRKIGAVGRANYLQRKVARYELIKYDVEKDEPVRDANGYCIKVPKG
EVGLLVCKITQLTPFIGYAGGKTQTEKKKLRDVFKKGDIYFNSGDLLMIDRENFVYFHDRVGDTFRWKGE
NVATTEVADIVGLVDFVEEVNVYGVPVPGHEGRIGMASLKIKENYEFNGKKLFQHIAEYLPSYARPRFLR
IQDTIEITGTFKHRKVTLMEEGFNPTVIKDTLYFMDDAEKTFVPMTENIYNAIIDKTLKL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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