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Report for CCDS16615.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16615.1 Public Mus musculus 2 Ehd4 23 108 98 CCDS HistoryNCBI Gene:98878Re-query CCDS DB by CCDS ID:16615.1Re-query CCDS DB by GeneID:98878See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16615.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028755.7 ENSMUSP00000028755.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028755.7Link to Ensembl Protein Viewer:ENSMUSP00000028755.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000028755Re-query CCDS DB by Protein ID:ENSMUSP00000028755
Original member NCBI NM_133838.4 NP_598599.2 Updated not alive Link to Nucleotide Sequence:NM_133838.4Link to Protein Sequence:NP_598599.2Re-query CCDS DB by Nucleotide ID:NM_133838Re-query CCDS DB by Protein ID:NP_598599
Current member NCBI NM_133838.5 NP_598599.2 Accepted alive Link to Nucleotide Sequence:NM_133838.5Link to Protein Sequence:NP_598599.2Re-query CCDS DB by Nucleotide ID:NM_133838Re-query CCDS DB by Protein ID:NP_598599Link to BLAST:NP_598599.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598599.2 541 Q9EQP2 541 100% 0 0

Chromosomal Locations for CCDS 16615.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 120091148 120091684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120096963 120097127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120102020 120102432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120127592 120127689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120136899 120137075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120154240 120154475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1626 nt):
ATGTTCAGCTGGATGGGGCGGCAGGCTGGCGGGCGCGAGCGCTCGGGCGGCATGGACGCGGTGCAGACGG
TGACGGGCGGCCTGCGCTCTCTGTACCAGCGCAAGGTGCTGCCGCTGGAGGAGGCGTACCGCTTCCACGA
GTTTCACTCGCCAGCGCTGGAGGACGCCGACTTCGAAAACAAGCCCATGATCCTGCTGGTGGGCCAGTAC
AGCACGGGCAAGACCACGTTCATCAGATACTTACTGGAGCAAGATTTCCCAGGCATGAGAATTGGTCCAG
AGCCAACCACAGATTCCTTCATTGCTGTGATGTATGGGGAGACTGAGGGAAGCACCCCTGGGAATGCTTT
AGTTGTGGATCCCAAAAAGCCATTCCGAAAGCTTAGTCGCTTTGGAAATGCTTTCCTGAACAGATTCATG
TGCTCACAGCTGCCCAACCAAGTTCTGAAGAGCATCAGCATCATCGACAGTCCTGGCATTCTGTCTGGGG
AGAAGCAGCGCATAAGCCGAGGGTATGACTTCTGCCAGGTCTTACAGTGGTTTGCCGAGAGGGTTGACAG
GATCATCCTGCTCTTTGACGCTCACAAATTGGACATCTCAGATGAGTTCTCAGAGGCGATCAAGGCCTTC
CGGGGCCAGGATGACAAAATCCGAGTGGTACTGAACAAGGCTGACCAAGTGGATACACAGCAGCTGATGC
GAGTCTATGGGGCCCTCATGTGGTCTCTGGGCAAGGTCATCAACACACCTGAAGTACTTCGAGTCTACAT
TGGTTCATTTTGGGCACAGCCCCTGCAAAACACCGACAACCGCCGGCTCTTTGAGGCTGAAGCACAGGAC
CTCTTCCGAGACATCCAGAGCCTGCCCCAGAAGGCTGCAGTGCGCAAACTCAATGACCTCATCAAGCGTG
CAAGGTTGGCCAAAGTCCACGCCTACATCATCAGCTACCTGAAGAAGGAAATGCCAAATATGTTTGGAAA
AGAAAATAAGAAGCGAGAACTTATCTACAGGCTCCCGGAAATCTATGTTCAGCTGCAGCGAGAATACCAG
ATTTCTGCAGGGGACTTCCCTGAGGTCAAGGCCATGCAGGAGCAGCTGGAGAACTACGACTTCACCAAGT
TCCACTCACTGAAGCCCAAGCTGATCGAGGCTGTGGACAACATGCTGACCAACAAGATCTCATCCCTGAT
GGGCCTCATCAGCCAGGAGGAGATGAACATGCCCACGCAGATGGTGCAGGGCGGCGCCTTTGATGGCACC
ACAGAGGGGCCCTTCAACCAGGGCTATGGGGAGGGGGCCAAGGAGGGGGCCGATGAGGAAGAGTGGGTCG
TGGCTAAAGACAAGCCGGTGTATGACGAACTCTTTTACACGCTGTCACCCATCAATGGCAAGATATCGGG
TGTCAACGCCAAGAAGGAGATGGTGACCTCCAAGCTGCCCAACAGTGTCCTGGGCAAGATCTGGAAGCTG
GCCGACTGCGACTGCGACGGCATGCTAGACGAGGAGGAGTTCGCGCTGGCCAAGCACCTCATCAAGATCA
AGCTGGACGGCTACGAGCTGCCCAACAGCCTGCCCCCACACCTGGTGCCCCCCTCCCACAGGAAGTCCCT
GCCAAAGGCTGACTGA

Translation (541 aa):
MFSWMGRQAGGRERSGGMDAVQTVTGGLRSLYQRKVLPLEEAYRFHEFHSPALEDADFENKPMILLVGQY
STGKTTFIRYLLEQDFPGMRIGPEPTTDSFIAVMYGETEGSTPGNALVVDPKKPFRKLSRFGNAFLNRFM
CSQLPNQVLKSISIIDSPGILSGEKQRISRGYDFCQVLQWFAERVDRIILLFDAHKLDISDEFSEAIKAF
RGQDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVINTPEVLRVYIGSFWAQPLQNTDNRRLFEAEAQD
LFRDIQSLPQKAAVRKLNDLIKRARLAKVHAYIISYLKKEMPNMFGKENKKRELIYRLPEIYVQLQREYQ
ISAGDFPEVKAMQEQLENYDFTKFHSLKPKLIEAVDNMLTNKISSLMGLISQEEMNMPTQMVQGGAFDGT
TEGPFNQGYGEGAKEGADEEEWVVAKDKPVYDELFYTLSPINGKISGVNAKKEMVTSKLPNSVLGKIWKL
ADCDCDGMLDEEEFALAKHLIKIKLDGYELPNSLPPHLVPPSHRKSLPKAD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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