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Report for CCDS16604.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16604.1 Public Mus musculus 2 Chp1 23 108 98 CCDS HistoryNCBI Gene:56398Re-query CCDS DB by CCDS ID:16604.1Re-query CCDS DB by GeneID:56398See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16604.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000014221.12 ENSMUSP00000014221.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000014221.12Link to Ensembl Protein Viewer:ENSMUSP00000014221.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000014221Re-query CCDS DB by Protein ID:ENSMUSP00000014221
Original member Current member NCBI NM_019769.3 NP_062743.1 Accepted alive Link to Nucleotide Sequence:NM_019769.3Link to Protein Sequence:NP_062743.1Re-query CCDS DB by Nucleotide ID:NM_019769Re-query CCDS DB by Protein ID:NP_062743Link to BLAST:NP_062743.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062743.1 195 P61022 195 100% 0 0

Chromosomal Locations for CCDS 16604.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 119547851 119547917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119560731 119560803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119566650 119566730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119571768 119571895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119580695 119580756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119584530 119584652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119585107 119585160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (588 nt):
ATGGGGTCTCGGGCCTCCACGTTATTGCGGGACGAAGAGCTCGAGGAGATCAAGAAGGAGACTGGCTTTT
CCCACAGTCAGATCACGCGCCTGTACAGCCGCTTCACCAGCCTGGACAAAGGGGAGAACGGGACTCTCAG
CCGGGAAGATTTCCAGAGGATTCCAGAACTTGCCATCAACCCACTGGGGGACCGGATCATCAATGCCTTC
TTCTCAGAGGGAGAGGATCAGGTAAACTTCCGAGGATTCATGAGAACATTGGCTCATTTCCGACCCATTG
AGGATAACGAAAAGAGCAAAGATGTGAATGGCCCGGAACCCCTCAACAGCCGGAGCAACAAGCTGCACTT
TGCTTTCAGACTCTATGATTTGGATAAAGATGACAAGATCTCCCGTGATGAGCTGTTACAGGTACTGCGA
ATGATGGTTGGAGTGAATATCTCGGATGAGCAGCTGGGCAGTATTGCGGACAGGACCATCCAGGAGGCTG
ACCAAGATGGAGATAGTGCCATATCTTTTACAGAATTCGTTAAGGTTTTGGAAAAAGTGGATGTAGAACA
GAAGATGAGCATCCGATTTCTTCACTAA

Translation (195 aa):
MGSRASTLLRDEELEEIKKETGFSHSQITRLYSRFTSLDKGENGTLSREDFQRIPELAINPLGDRIINAF
FSEGEDQVNFRGFMRTLAHFRPIEDNEKSKDVNGPEPLNSRSNKLHFAFRLYDLDKDDKISRDELLQVLR
MMVGVNISDEQLGSIADRTIQEADQDGDSAISFTEFVKVLEKVDVEQKMSIRFLH


Links Key
 Links to:   History report
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  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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