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Report for CCDS16495.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16495.1 Public Mus musculus 2 Eif3m 23 108 98 CCDS HistoryNCBI Gene:98221Re-query CCDS DB by CCDS ID:16495.1Re-query CCDS DB by GeneID:98221See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 16495.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028592.11 ENSMUSP00000028592.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028592.11Link to Ensembl Protein Viewer:ENSMUSP00000028592.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000028592Re-query CCDS DB by Protein ID:ENSMUSP00000028592
Original member Current member NCBI NM_145380.2 NP_663355.1 Accepted alive Link to Nucleotide Sequence:NM_145380.2Link to Protein Sequence:NP_663355.1Re-query CCDS DB by Nucleotide ID:NM_145380Re-query CCDS DB by Protein ID:NP_663355Link to BLAST:NP_663355.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_663355.1 374 Q99JX4 374 100% 0 0

Chromosomal Locations for CCDS 16495.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 104999721 104999841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 105000242 105000302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 105001271 105001414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 105004925 105005006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 105005781 105005880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 105006756 105006839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 105012851 105012945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 105013198 105013321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 105013745 105013883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 105014770 105014902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 105016946 105016987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1125 nt):
ATGAGCGTCCCGGCCTTCATCGATATCAGCGAGGAAGACCAGGCTGCTGAACTTCGAGCTTATCTGAAAT
CAAAAGGAGCTGAGCTCTCAGAAGAAAACTCGGAAGGTGGACTTCATGTAGATTTAGCTCAGATTATTGA
AGCCTGTGATGTGTGTCTGAAGGAAGATGATAAAGATGTTGAAAGTGTGATGAACAGTGTGGTGTCCCTC
CTGTTGATCCTGGAACCAGACAAGCAAGAAGCATTGATTGAAAGTCTGTGTGAAAAGCTGGTCAAGTTTC
GGGAAGGCGAACGCCCATCTCTGAGACTACAGTTGCTCAGCAACCTTTTCCATGGGATGGACAAGAATAC
TCCTGTGAGGTACACAGTGTACTGCAGCCTCATCAAAGTGGCGGCATCATGTGGGGCCATCCAGTACATC
CCAACGGAGCTGGATCAAGTGAGAAAGTGGATCTCTGACTGGAAGCTCACCACTGAAAAGAAGCACACCC
TCCTCAGACTGCTCTACGAGGCGCTCGTGGATTGTAAGAAAAGTGATGCTGCATCAAAGGTCATGGTGGA
ATTGCTCGGGAGTTACACAGAGGACAATGCTTCCCAGGCTCGAGTTGATGCCCACAGGTGTATTGTGCGG
GCACTAAAGGATCCAAATGCCTTTCTTTTTGACCATCTTCTTACTCTAAAGCCAGTCAAATTTTTGGAAG
GCGAGCTTATCCATGATTTATTAACCATTTTTGTGAGTGCTAAATTGGCATCGTATGTCAAGTTCTATCA
GAATAACAAAGACTTCATAGATTCACTTGGCTTGTTACATGAGCAAAATATGGCGAAAATGAGACTCCTC
ACCTTTATGGGAATGGCAGTGGAAAACAAAGAGATTTCTTTTGACACAATGCAGCAAGAGCTACAGATTG
GAGCTGATGATGTTGAAGCATTTGTTATTGATGCTGTAAGAACTAAAATGGTCTACTGCAAAATTGATCA
GACCCAAAGAAAAGTAGTTGTCAGTCACAGCACACATCGGACATTTGGAAAACAGCAGTGGCAACAACTG
TATGACACTCTTAATGCCTGGAAACAGAACTTGAACAAAGTGAAAAATAGCCTTTTGAGTCTTTCAGATA
CCTGA

Translation (374 aa):
MSVPAFIDISEEDQAAELRAYLKSKGAELSEENSEGGLHVDLAQIIEACDVCLKEDDKDVESVMNSVVSL
LLILEPDKQEALIESLCEKLVKFREGERPSLRLQLLSNLFHGMDKNTPVRYTVYCSLIKVAASCGAIQYI
PTELDQVRKWISDWKLTTEKKHTLLRLLYEALVDCKKSDAASKVMVELLGSYTEDNASQARVDAHRCIVR
ALKDPNAFLFDHLLTLKPVKFLEGELIHDLLTIFVSAKLASYVKFYQNNKDFIDSLGLLHEQNMAKMRLL
TFMGMAVENKEISFDTMQQELQIGADDVEAFVIDAVRTKMVYCKIDQTQRKVVVSHSTHRTFGKQQWQQL
YDTLNAWKQNLNKVKNSLLSLSDT


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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