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Report for CCDS16475.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16475.1 Public Mus musculus 2 Ehf 23 108 98 CCDS HistoryNCBI Gene:13661Re-query CCDS DB by CCDS ID:16475.1Re-query CCDS DB by GeneID:13661See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16475.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000090475.9 ENSMUSP00000087961.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000090475.9Link to Ensembl Protein Viewer:ENSMUSP00000087961.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000090475Re-query CCDS DB by Protein ID:ENSMUSP00000087961
Original member Current member EBI ENSMUST00000111174.7 ENSMUSP00000106805.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111174.7Link to Ensembl Protein Viewer:ENSMUSP00000106805.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000111174Re-query CCDS DB by Protein ID:ENSMUSP00000106805
Original member Current member NCBI NM_007914.3 NP_031940.1 Accepted alive Link to Nucleotide Sequence:NM_007914.3Link to Protein Sequence:NP_031940.1Re-query CCDS DB by Nucleotide ID:NM_007914Re-query CCDS DB by Protein ID:NP_031940Link to BLAST:NP_031940.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031940.1 300 O70273-1 300 100% 0 0

Chromosomal Locations for CCDS 16475.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 103266772 103266871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 103266967 103267162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 103268158 103268220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 103273885 103273953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 103274054 103274122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 103276772 103276834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 103279518 103279763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 103283521 103283617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (903 nt):
ATGATTCTGGAAGGAAGTGGTGTAATGAATCTCAACCCAGCCAACAACCTCCTTCACCAGCAACCAGCCT
GGACGGACAGCTACCCCACATGCAATGTTTCCAGCGGTTTTTTTGGAAGCCAGTGGCATGAAATCCACCC
TCAGTACTGGACCAAATACCAGGTGTGGGAATGGCTGCAGCACCTCCTGGACACCAACCAGCTAGACGCT
AGCTGCATCCCTTTCCAGGAGTTCGACATTAGCGGAGAACACCTGTGCAGCATGAGTCTGCAGGAGTTCA
CGAGGGCAGCAGGCTCAGCTGGGCAGCTGCTCTACAGCAACCTACAGCATCTCAAGTGGAACGGCCAATG
CAGCAGTGACCTTTTCCAGTCCGCACACAATGTCATTGTCAAGACTGAACAAACCGATCCTTCCATCATG
AACACATGGAAAGAAGAAAACTATCTCTATGATCCCAGCTATGGTAGCACAGTAGATCTGTTGGACAGTA
AGACTTTCTGCCGGGCTCAGATCTCCATGACAACCTCCAGTCACCTTCCAGTTGCAGAGTCACCTGATAT
GAAAAAGGAGCAAGACCACCCTGTAAAGTCCCACACCAAAAAGCACAACCCAAGAGGCACTCACTTATGG
GAGTTCATCCGAGACATTCTCTTGAGCCCAGACAAGAACCCAGGACTGATCAAATGGGAAGACCGTTCGG
AAGGCATCTTCAGGTTCCTGAAGTCAGAAGCTGTGGCTCAGCTGTGGGGGAAAAAGAAAAATAACAGTAG
CATGACATACGAGAAGCTCAGCCGGGCTATGAGATATTACTACAAACGAGAAATCCTGGAACGTGTGGAT
GGACGACGGCTGGTCTATAAGTTTGGGAAGAATGCTCGTGGATGGAGAGAAAATGAGAACTGA

Translation (300 aa):
MILEGSGVMNLNPANNLLHQQPAWTDSYPTCNVSSGFFGSQWHEIHPQYWTKYQVWEWLQHLLDTNQLDA
SCIPFQEFDISGEHLCSMSLQEFTRAAGSAGQLLYSNLQHLKWNGQCSSDLFQSAHNVIVKTEQTDPSIM
NTWKEENYLYDPSYGSTVDLLDSKTFCRAQISMTTSSHLPVAESPDMKKEQDHPVKSHTKKHNPRGTHLW
EFIRDILLSPDKNPGLIKWEDRSEGIFRFLKSEAVAQLWGKKKNNSSMTYEKLSRAMRYYYKREILERVD
GRRLVYKFGKNARGWRENEN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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