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Report for CCDS1626.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1626.1 Public Homo sapiens 1 DESI2 24 110 108 CCDS HistoryNCBI Gene:51029Re-query CCDS DB by CCDS ID:1626.1Re-query CCDS DB by GeneID:51029See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1626.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000302550.16 ENSP00000306528.11 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000302550.16Link to Ensembl Protein Viewer:ENSP00000306528.11Re-query CCDS DB by Nucleotide ID:ENST00000302550Re-query CCDS DB by Protein ID:ENSP00000306528
Original member Current member NCBI NM_016076.5 NP_057160.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016076.5Link to Protein Sequence:NP_057160.2Re-query CCDS DB by Nucleotide ID:NM_016076Re-query CCDS DB by Protein ID:NP_057160Link to BLAST:NP_057160.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057160.2 194 Q9BSY9-1 194 100% 0 0

Chromosomal Locations for CCDS 1626.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 244653314 244653355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 244686597 244686669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 244689249 244689342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 244691879 244692020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 244705556 244705789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (585 nt):
ATGGGGGCTAACCAGTTAGTGGTGCTCAACGTGTACGACATGTATTGGATGAACGAATATACCTCATCCA
TTGGAATTGGAGTTTTTCATTCAGGAATTGAAGTCTATGGCAGAGAATTTGCTTATGGTGGCCATCCTTA
CCCCTTTTCTGGAATATTTGAAATTTCCCCAGGAAATGCTTCTGAACTAGGAGAAACATTTAAATTTAAA
GAAGCTGTTGTTTTAGGGAGCACGGACTTCCTAGAAGATGATATAGAAAAAATTGTAGAAGAACTGGGAA
AAGAATACAAAGGCAATGCTTATCATTTAATGCATAAAAACTGCAATCATTTTTCTTCAGCTTTATCAGA
GATTCTTTGTGGGAAAGAGATTCCTCGCTGGATCAATCGACTTGCCTACTTCAGCTCCTGTATACCCTTT
CTACAGAGTTGCCTCCCGAAGGAGTGGCTCACGCCCGCAGCCCTGCAGTCTAGTGTCAGCCAAGAACTCC
AGGATGAACTGGAGGAAGCAGAGGATGCTGCCGCATCCGCTTCCGTGGCAAGCACTGCAGCAGGCTCCAG
ACCCGGGCGCCACACTAAACTATAA

Translation (194 aa):
MGANQLVVLNVYDMYWMNEYTSSIGIGVFHSGIEVYGREFAYGGHPYPFSGIFEISPGNASELGETFKFK
EAVVLGSTDFLEDDIEKIVEELGKEYKGNAYHLMHKNCNHFSSALSEILCGKEIPRWINRLAYFSSCIPF
LQSCLPKEWLTPAALQSSVSQELQDELEEAEDAAASASVASTAAGSRPGRHTKL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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