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Report for CCDS16035.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16035.1 Public Mus musculus 2 Cacnb4 23 108 98 CCDS HistoryNCBI Gene:12298Re-query CCDS DB by CCDS ID:16035.1Re-query CCDS DB by GeneID:12298See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16035.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102760.9 ENSMUSP00000099821.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102760.9Link to Ensembl Protein Viewer:ENSMUSP00000099821.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000102760Re-query CCDS DB by Protein ID:ENSMUSP00000099821
Original member NCBI NM_146123.3 NP_666235.1 Updated not alive Link to Nucleotide Sequence:NM_146123.3Link to Protein Sequence:NP_666235.1Re-query CCDS DB by Nucleotide ID:NM_146123Re-query CCDS DB by Protein ID:NP_666235
Current member NCBI NM_146123.4 NP_666235.1 Accepted alive Link to Nucleotide Sequence:NM_146123.4Link to Protein Sequence:NP_666235.1Re-query CCDS DB by Nucleotide ID:NM_146123Re-query CCDS DB by Protein ID:NP_666235Link to BLAST:NP_666235.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666235.1 486 Q8R0S4-1 486 100% 0 0

Chromosomal Locations for CCDS 16035.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 52434489 52434749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 52436886 52437071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 52449950 52450045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 52451869 52452020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 52455600 52455709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 52464610 52464668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 52465598 52465678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 52465894 52465913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 52467244 52467320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 52469477 52469607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 52474863 52474985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 52477692 52477811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 52558269 52558313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1461 nt):
ATGTATGACAATTTGTACCTGCATGGAGTTGAAGACTCGGAGGCTGGGTCAGCAGATTCCTATACAAGCA
GGCCATCGGACTCCGATGTCTCCTTGGAAGAGGACCGGGAAGCGATCCGGCAAGAGCGAGAACAGCAAGC
AGCTATCCAGCTTGAGAGAGCGAAGTCCAAACCTGTAGCTTTTGCGGTGAAAACGAACGTGAGCTACTGT
GGTGCCCTGGACGAAGATGTGCCCGTTCCCAGCACAGCCATCTCCTTTGACGCCAAGGACTTTCTTCACA
TTAAAGAGAAATATAACAATGATTGGTGGATAGGAAGACTGGTAAAAGAGGGCTGTGAGATTGGCTTCAT
CCCAAGTCCACTGCGCTTGGAGAATATTCGGATTCAACAGGAACAGAAAAGAGGCCGTTTTCATGGCGGG
AAATCGAGTGGAAACTCTTCCTCCAGTCTGGGAGAAATGGTATCAGGAACATTCCGAGCAACTCCCACAA
CAACAGCAAAACAGAAGCAGAAAGTGACGGAGCACATTCCTCCGTATGACGTCGTGCCGTCAATGCGTCC
TGTGGTGTTAGTGGGGCCATCACTGAAAGGTTATGAGGTAACAGACATGATGCAGAAAGCCCTCTTTGAT
TTCCTGAAGCACAGGTTTGATGGGAGGATATCAATAACAAGAGTGACAGCTGACATTTCTCTTGCTAAGA
GATCTGTCCTCAACAATCCTAGCAAGAGAGCAATAATTGAACGTTCCAACACCAGATCCAGCTTAGCGGA
AGTACAAAGTGAAATTGAAAGAATTTTTGAGTTGGCAAGATCTTTGCAATTGGTTGTTCTTGATGCAGAC
ACCATCAACCACCCAGCACAGCTGATAAAGACATCCTTAGCACCCATCATCGTCCACGTGAAGGTCTCGT
CCCCAAAGGTTTTACAGCGGCTGATTAAGTCCAGAGGAAAGTCCCAAAGCAAACACTTGAATGTTCAACT
GGTGGCGGCCGATAAACTGGCCCAGTGCCCGCCTGAAATGTTTGATGTTATATTAGATGAGAATCAACTT
GAGGATGCCTGTGAACATCTGGGAGAGTACCTGGAGGCATACTGGCGTGCCACCCACACGAGCAGTAGCA
CCCCTATGACCCCATTACTGGGGCGGAACGTGGGCTCCACAGCCCTCTCACCATATCCCACAGCAATCTC
TGGATTACAGAGTCAGCGAATGAGACACAGCAACCATTCTACAGAGAATTCTCCAATTGAAAGACGAAGC
CTAATGACCTCGGATGAAAATTACCACAATGAGAGGGCCCGCAAGAGTAGGAACCGCTTGTCTTCCAGCT
CCCAGCACAGCCGAGACCACTACCCTCTGGTGGAAGAAGATTACCCGGACTCGTACCAGGACACTTATAA
GCCCCATAGGAACCGAGGATCGCCCGGGGGGTGCAGCCATGACTCCCGACATAGGCTTTGA

Translation (486 aa):
MYDNLYLHGVEDSEAGSADSYTSRPSDSDVSLEEDREAIRQEREQQAAIQLERAKSKPVAFAVKTNVSYC
GALDEDVPVPSTAISFDAKDFLHIKEKYNNDWWIGRLVKEGCEIGFIPSPLRLENIRIQQEQKRGRFHGG
KSSGNSSSSLGEMVSGTFRATPTTTAKQKQKVTEHIPPYDVVPSMRPVVLVGPSLKGYEVTDMMQKALFD
FLKHRFDGRISITRVTADISLAKRSVLNNPSKRAIIERSNTRSSLAEVQSEIERIFELARSLQLVVLDAD
TINHPAQLIKTSLAPIIVHVKVSSPKVLQRLIKSRGKSQSKHLNVQLVAADKLAQCPPEMFDVILDENQL
EDACEHLGEYLEAYWRATHTSSSTPMTPLLGRNVGSTALSPYPTAISGLQSQRMRHSNHSTENSPIERRS
LMTSDENYHNERARKSRNRLSSSSQHSRDHYPLVEEDYPDSYQDTYKPHRNRGSPGGCSHDSRHRL


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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