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Report for CCDS15896.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15896.1 Public Mus musculus 2 Ncs1 23 108 98 CCDS HistoryNCBI Gene:14299Re-query CCDS DB by CCDS ID:15896.1Re-query CCDS DB by GeneID:14299See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 15896.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000000199.7 ENSMUSP00000000199.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000000199.7Link to Ensembl Protein Viewer:ENSMUSP00000000199.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000000199Re-query CCDS DB by Protein ID:ENSMUSP00000000199
Original member Current member NCBI NM_019681.3 NP_062655.1 Accepted alive Link to Nucleotide Sequence:NM_019681.3Link to Protein Sequence:NP_062655.1Re-query CCDS DB by Nucleotide ID:NM_019681Re-query CCDS DB by Protein ID:NP_062655Link to BLAST:NP_062655.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062655.1 190 Q8BNY6 190 100% 0 0

Chromosomal Locations for CCDS 15896.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 31246179 31246242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 31270612 31270636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 31280666 31280804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 31282309 31282387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 31284147 31284235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 31284662 31284739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 31287287 31287385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (573 nt):
ATGGGGAAATCCAACAGCAAGTTGAAGCCTGAAGTTGTGGAGGAGCTGACCAGAAAAACCTACTTCACTG
AGAAAGAAGTACAGCAGTGGTACAAGGGCTTCATTAAGGACTGCCCCAGCGGGCAGCTGGATGCCGCTGG
CTTCCAGAAGATCTACAAGCAGTTCTTCCCATTTGGAGACCCCACCAAGTTCGCCACGTTTGTTTTCAAC
GTCTTCGACGAGAACAAGGATGGCAGGATTGAGTTCTCCGAGTTCATCCAGGCACTGTCGGTGACCTCAA
GGGGGACCCTGGATGAAAAGCTGCGATGGGCCTTCAAGCTTTATGACTTGGATAACGATGGCTACATCAC
CAGGAACGAGATGCTCGACATAGTGGACGCCATTTACCAGATGGTGGGGAACACCGTGGAGCTCCCAGAA
GAAGAGAACACACCAGAGAAGAGGGTGGACCGGATCTTTGCCATGATGGACAAGAATGCTGATGGGAAGC
TGACTCTTCAGGAGTTCCAGGAAGGCTCCAAGGCTGATCCCTCCATTGTGCAGGCGCTGTCCCTCTACGA
TGGGCTGGTATAG

Translation (190 aa):
MGKSNSKLKPEVVEELTRKTYFTEKEVQQWYKGFIKDCPSGQLDAAGFQKIYKQFFPFGDPTKFATFVFN
VFDENKDGRIEFSEFIQALSVTSRGTLDEKLRWAFKLYDLDNDGYITRNEMLDIVDAIYQMVGNTVELPE
EENTPEKRVDRIFAMMDKNADGKLTLQEFQEGSKADPSIVQALSLYDGLV


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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