NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS15834.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15834.1 Public Mus musculus 2 Olfm1 23 108 98 CCDS HistoryNCBI Gene:56177Re-query CCDS DB by CCDS ID:15834.1Re-query CCDS DB by GeneID:56177See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15834.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028177.10 ENSMUSP00000028177.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028177.10Link to Ensembl Protein Viewer:ENSMUSP00000028177.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000028177Re-query CCDS DB by Protein ID:ENSMUSP00000028177
Original member Current member NCBI NM_019498.2 NP_062371.2 Accepted alive Link to Nucleotide Sequence:NM_019498.2Link to Protein Sequence:NP_062371.2Re-query CCDS DB by Nucleotide ID:NM_019498Re-query CCDS DB by Protein ID:NP_062371Link to BLAST:NP_062371.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062371.2 485 O88998-1 485 99.7938% 0 1

Chromosomal Locations for CCDS 15834.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 28205950 28206099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 28208078 28208227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 28212532 28212687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 28214609 28214828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 28222551 28222657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 28229054 28229728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1458 nt):
ATGTCGGTGCCGCTGCTGAAGATCGGGGTCGTGCTAAGCACCATGGCCATGATCACCAACTGGATGTCCC
AGACGCTGCCCTCGCTGGTGGGCCTCAATACCACCCGGCTTTCGGCCGCCAGCGGCGGGACGCTGGACCG
CAGCACCGGCGTGTTGCCCACCAACCCCGAGGAGAGCTGGCAGGTGTACAGCTCTGCCCAGGACAGTGAG
GGCAGGTGTATCTGCACAGTGGTCGCCCCCCAGCAGACCATGTGTTCGCGGGATGCCCGCACAAAACAGC
TGAGGCAGCTACTGGAGAAGGTGCAAAACATGTCTCAATCCATAGAAGTCTTGGACAGGCGAACTCAGAG
AGACCTGCAGTACGTGGAGAAGATGGAGAACCAGATGAAAGGCCTGGAGACCAAGTTCAAGCAGGTGGAG
GAGAGCCATAAGCAGCATCTAGCCAGGCAGTTCAAGGCAATAAAAGCGAAAATGGATGAACTTAGGCCTT
TGATTCCTGTGTTGGAAGAGTACAAGGCCGATGCCAAATTGGTATTGCAGTTTAAGGAGGAGGTCCAGAA
TCTGACGTCAGTGCTTAACGAACTGCAAGAGGAGATTGGCGCCTATGACTACGATGAACTTCAGAGCAGA
GTGTCCAATCTTGAAGAAAGGCTCCGTGCATGCATGCAAAAACTAGCCTGCGGGAAGCTGACAGGCATAA
GTGACCCAGTGACTGTCAAGACCTCTGGCTCAAGGTTCGGGTCCTGGATGACAGACCCGCTGGCCCCAGA
AGGCGATAACCGGGTCTGGTACATGGATGGTTATCACAACAACCGCTTCGTCCGTGAGTACAAGTCCATG
GTGGACTTCATGAACACGGACAACTTTACCTCTCACCGTCTCCCACACCCCTGGTCAGGTACGGGCCAGG
TGGTCTACAATGGCTCCATCTATTTCAACAAATTCCAGAGTCACATTATCATTAGGTTTGACCTGAAGAC
AGAGACGATTCTGAAGACGCGCAGCCTGGACTATGCTGGCTACAACAATATGTATCACTATGCCTGGGGC
GGCCACTCAGACATCGACCTCATGGTGGACGAGAATGGGCTCTGGGCTGTCTATGCCACAAACCAGAACG
CAGGCAACATTGTCATCAGCAAGCTGGATCCTGTCTCACTGCAGATCCTCCAGACCTGGAACACCAGCTA
CCCCAAGCGCAGTGCCGGTGAGGCCTTCATCATCTGCGGCACCCTCTATGTCACCAACGGTTACTCGGGG
GGCACCAAGGTCCACTATGCCTACCAAACCAACGCCTCGACCTACGAGTACATTGACATCCCCTTCCAGA
ACAAATACTCTCACATCTCCATGCTGGACTACAACCCTAAAGACCGCGCGCTGTACGCCTGGAACAATGG
CCATCAGACCCTCTATAATGTCACCCTCTTCCATGTCATCCGCTCCGATGAGTTGTAG

Translation (485 aa):
MSVPLLKIGVVLSTMAMITNWMSQTLPSLVGLNTTRLSAASGGTLDRSTGVLPTNPEESWQVYSSAQDSE
GRCICTVVAPQQTMCSRDARTKQLRQLLEKVQNMSQSIEVLDRRTQRDLQYVEKMENQMKGLETKFKQVE
ESHKQHLARQFKAIKAKMDELRPLIPVLEEYKADAKLVLQFKEEVQNLTSVLNELQEEIGAYDYDELQSR
VSNLEERLRACMQKLACGKLTGISDPVTVKTSGSRFGSWMTDPLAPEGDNRVWYMDGYHNNRFVREYKSM
VDFMNTDNFTSHRLPHPWSGTGQVVYNGSIYFNKFQSHIIIRFDLKTETILKTRSLDYAGYNNMYHYAWG
GHSDIDLMVDENGLWAVYATNQNAGNIVISKLDPVSLQILQTWNTSYPKRSAGEAFIICGTLYVTNGYSG
GTKVHYAYQTNASTYEYIDIPFQNKYSHISMLDYNPKDRALYAWNNGHQTLYNVTLFHVIRSDEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH