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Report for CCDS15833.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15833.1 Public Mus musculus 2 Olfm1 23 108 98 CCDS HistoryNCBI Gene:56177Re-query CCDS DB by CCDS ID:15833.1Re-query CCDS DB by GeneID:56177See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 15833.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000100244.9 ENSMUSP00000097815.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000100244.9Link to Ensembl Protein Viewer:ENSMUSP00000097815.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000100244Re-query CCDS DB by Protein ID:ENSMUSP00000097815
Original member Current member NCBI NM_001038613.1 NP_001033702.1 Accepted alive Link to Nucleotide Sequence:NM_001038613.1Link to Protein Sequence:NP_001033702.1Re-query CCDS DB by Nucleotide ID:NM_001038613Re-query CCDS DB by Protein ID:NP_001033702Link to BLAST:NP_001033702.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001033702.1 457 O88998-3 457 99.7812% 0 1

Chromosomal Locations for CCDS 15833.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 28193397 28193462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 28208078 28208227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 28212532 28212687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 28214609 28214828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 28222551 28222657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 28229054 28229728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1374 nt):
ATGCAACCGGCCCGGAAGCTCCTCAGCCTCCTGGTCCTCCTGGTGATGGGCACCGAACTCACCCAAGTGT
TGCCCACCAACCCCGAGGAGAGCTGGCAGGTGTACAGCTCTGCCCAGGACAGTGAGGGCAGGTGTATCTG
CACAGTGGTCGCCCCCCAGCAGACCATGTGTTCGCGGGATGCCCGCACAAAACAGCTGAGGCAGCTACTG
GAGAAGGTGCAAAACATGTCTCAATCCATAGAAGTCTTGGACAGGCGAACTCAGAGAGACCTGCAGTACG
TGGAGAAGATGGAGAACCAGATGAAAGGCCTGGAGACCAAGTTCAAGCAGGTGGAGGAGAGCCATAAGCA
GCATCTAGCCAGGCAGTTCAAGGCAATAAAAGCGAAAATGGATGAACTTAGGCCTTTGATTCCTGTGTTG
GAAGAGTACAAGGCCGATGCCAAATTGGTATTGCAGTTTAAGGAGGAGGTCCAGAATCTGACGTCAGTGC
TTAACGAACTGCAAGAGGAGATTGGCGCCTATGACTACGATGAACTTCAGAGCAGAGTGTCCAATCTTGA
AGAAAGGCTCCGTGCATGCATGCAAAAACTAGCCTGCGGGAAGCTGACAGGCATAAGTGACCCAGTGACT
GTCAAGACCTCTGGCTCAAGGTTCGGGTCCTGGATGACAGACCCGCTGGCCCCAGAAGGCGATAACCGGG
TCTGGTACATGGATGGTTATCACAACAACCGCTTCGTCCGTGAGTACAAGTCCATGGTGGACTTCATGAA
CACGGACAACTTTACCTCTCACCGTCTCCCACACCCCTGGTCAGGTACGGGCCAGGTGGTCTACAATGGC
TCCATCTATTTCAACAAATTCCAGAGTCACATTATCATTAGGTTTGACCTGAAGACAGAGACGATTCTGA
AGACGCGCAGCCTGGACTATGCTGGCTACAACAATATGTATCACTATGCCTGGGGCGGCCACTCAGACAT
CGACCTCATGGTGGACGAGAATGGGCTCTGGGCTGTCTATGCCACAAACCAGAACGCAGGCAACATTGTC
ATCAGCAAGCTGGATCCTGTCTCACTGCAGATCCTCCAGACCTGGAACACCAGCTACCCCAAGCGCAGTG
CCGGTGAGGCCTTCATCATCTGCGGCACCCTCTATGTCACCAACGGTTACTCGGGGGGCACCAAGGTCCA
CTATGCCTACCAAACCAACGCCTCGACCTACGAGTACATTGACATCCCCTTCCAGAACAAATACTCTCAC
ATCTCCATGCTGGACTACAACCCTAAAGACCGCGCGCTGTACGCCTGGAACAATGGCCATCAGACCCTCT
ATAATGTCACCCTCTTCCATGTCATCCGCTCCGATGAGTTGTAG

Translation (457 aa):
MQPARKLLSLLVLLVMGTELTQVLPTNPEESWQVYSSAQDSEGRCICTVVAPQQTMCSRDARTKQLRQLL
EKVQNMSQSIEVLDRRTQRDLQYVEKMENQMKGLETKFKQVEESHKQHLARQFKAIKAKMDELRPLIPVL
EEYKADAKLVLQFKEEVQNLTSVLNELQEEIGAYDYDELQSRVSNLEERLRACMQKLACGKLTGISDPVT
VKTSGSRFGSWMTDPLAPEGDNRVWYMDGYHNNRFVREYKSMVDFMNTDNFTSHRLPHPWSGTGQVVYNG
SIYFNKFQSHIIIRFDLKTETILKTRSLDYAGYNNMYHYAWGGHSDIDLMVDENGLWAVYATNQNAGNIV
ISKLDPVSLQILQTWNTSYPKRSAGEAFIICGTLYVTNGYSGGTKVHYAYQTNASTYEYIDIPFQNKYSH
ISMLDYNPKDRALYAWNNGHQTLYNVTLFHVIRSDEL


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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