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Report for CCDS15808.3 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15808.3 Public Mus musculus 2 Egfl7 23 108 98 CCDS HistoryNCBI Gene:353156Re-query CCDS DB by CCDS ID:15808.3Re-query CCDS DB by GeneID:353156See the combined annotation on chromosome 2 in Sequence Viewer

Public Note for CCDS 15808.1
The coding region has been updated to extend the N-terminus. The use of an alternative upstream start codon, which appears to be rodent-specific, would result in a protein that is 3 aa longer.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 15808.3

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000100290.12 ENSMUSP00000097863.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000100290.12Link to Ensembl Protein Viewer:ENSMUSP00000097863.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000100290Re-query CCDS DB by Protein ID:ENSMUSP00000097863
Original member Current member NCBI NM_198725.3 NP_942018.3 Accepted alive Link to Nucleotide Sequence:NM_198725.3Link to Protein Sequence:NP_942018.3Re-query CCDS DB by Nucleotide ID:NM_198725Re-query CCDS DB by Protein ID:NP_942018Link to BLAST:NP_942018.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_942018.3 262 Q9QXT5-2 262 100% 0 0

Chromosomal Locations for CCDS 15808.3

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 26589087 26589169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26589330 26589446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26590380 26590495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26590657 26590752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26590899 26591063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26591664 26591728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26592118 26592241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26592418 26592440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (789 nt):
ATGTGGGGCTCCGGAGAACTGCTTGTAGCATGGTTTCTAGTGTTGGCAGCAGATGGTACTACTGAGCATG
TC
TACAGACCCAGCCGTAGAGTGTGTACTGTGGGGATTTCCGGAGGTTCCATCTCGGAGACCTTTGTGCA
G
CGTGTATACCAGCCTTACCTCACCACTTGCGACGGACACAGAGCCTGCAGCACCTACCGAACCATCTAC
CGG
ACTGCCTATCGCCGTAGCCCTGGGGTGACTCCCGCAAGGCCTCGCTATGCTTGCTGCCCTGGTTGGA
AG
AGGACCAGTGGGCTCCCTGGGGCTTGTGGAGCAGCAATATGCCAGCCTCCATGTGGGAATGGAGGGAG
T
TGCATCCGCCCAGGACACTGCCGCTGCCCTGTGGGATGGCAGGGAGATACTTGCCAGACAGATGTTGAT
GAA
TGCAGTACAGGAGAGGCCAGTTGTCCCCAGCGCTGTGTCAATACTGTGGGAAGTTACTGGTGCCAGG
GA
TGGGAGGGACAAAGCCCATCTGCAGATGGGACGCGCTGCCTGTCTAAGGAGGGGCCCTCCCCGGTGGC
C
CCAAACCCCACAGCAGGAGTGGACAGCATGGCGAGAGAGGAGGTGTACAGGCTGCAGGCTCGGGTTGAT
GTG
CTAGAACAGAAACTGCAGTTGGTGCTGGCCCCACTGCACAGCCTGGCCTCTCGGTCCACAGAGCATG
GG
CTACAAGATCCTGGCAGCCTGCTGGCCCATTCCTTCCAGCAGCTGGACCGAATTGATTCACTGAGCTC
C
TGCAAAAAAGATCTGTGA


Translation (262 aa):
MWGSGELLVAWFLVLAADGTTEHVYRPSRRVCTVGISGGSISETFVQRVYQPYLTTCDGHRACSTYRTIY
R
TAYRRSPGVTPARPRYACCPGWKRTSGLPGACGA
AICQPPCGNGGSCIRPGHCRCPVGWQGDTCQTDVD
E
CSTGEASCPQRCVNTVGSYWCQGWEGQSPSADGTRCLSKEGPSPVAPNPTA
GVDSMAREEVYRLQARVD
V
LEQ
KLQLVLAPLHSLASRSTEHGLQDPGSLLAHSFQQLDRIDSLSSCKKDL



Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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