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Report for CCDS15795.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15795.1 Public Mus musculus 2 Ubac1 23 108 98 CCDS HistoryNCBI Gene:98766Re-query CCDS DB by CCDS ID:15795.1Re-query CCDS DB by GeneID:98766See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15795.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000036509.13 ENSMUSP00000040220.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000036509.13Link to Ensembl Protein Viewer:ENSMUSP00000040220.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000036509Re-query CCDS DB by Protein ID:ENSMUSP00000040220
Original member Current member NCBI NM_133835.2 NP_598596.2 Accepted alive Link to Nucleotide Sequence:NM_133835.2Link to Protein Sequence:NP_598596.2Re-query CCDS DB by Nucleotide ID:NM_133835Re-query CCDS DB by Protein ID:NP_598596Link to BLAST:NP_598596.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598596.2 409 Q8VDI7 409 100% 0 0

Chromosomal Locations for CCDS 15795.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 25998952 25999067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26005326 26005464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26006527 26006613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26007719 26007953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26008861 26008969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26009161 26009263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26010522 26010629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26014892 26014965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26016296 26016416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26021397 26021534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1230 nt):
ATGTTCGTGCAGGAGGAGAAGATCTTCGCGGGCAAGGTGCTTCGGCTGCACATCTGCGCAGCCGACGGCG
CCGAGTGGCTGGAGGAGGCGACCGAGGACACATCGGTGGAGAAGCTCAAGGAGAGTTGCCTCAAACATGG
TGCTCATGGGAGCCTAGAAGACCCCAAGAATGTGACCCACCACAAGCTAATACATGCTGCTTCAGAGAGG
GTGCTGAGTGACAGCAAAACGATCTTGGAAGAAAACATCCAGGACCAAGACGTCTTGTTATTGATAAAAA
AGCGTGTTCCTTCTCCACTCCCTAAGATGGCTGACGTCTCAGCAGAAGAAAAGAAGAAACAAGAGCAAAA
GGCTCCAGACAAAGATGCTATTCTTCGAGCAACGGCAAACCTGCCTGCCTGCAGCACTGACCGGACTGCT
GTCCAGACCACCATGAGAGACTTCCAGACAGAACTCCGGAAGATCCTCGTGTCTCTCATTGAGGTGGCAC
AGAAGCTGTTAGCACTGAATCCCGATGCAGTTGAATTGTTTAAGAAGGCAAATGCTATGCTGGATGAAGA
TGAGGATGAGCGAGTGGATGAGACTGCCTTGCGGCAGCTCACAGAGATGGGCTTTCCTGAGAGCAGAGCC
TCAAAGGCCCTTCGGCTGAACCACATGTCAGTGCCTCAGGCCATGGAGTGGCTAATTGAACACTCAGAAG
ATCCAGCTATTGACACACCTCTTCCAGGCCATGCTGCTCAAGCAGGGGCCAGTGCTGCAGCCACTACCTC
CTCCACCTCCTCTGAAGCTGCTGTGGGAACTAGTGTTGAAGATGAGGAGTCCCGGGATGAGCTCACAGAA
ATCTTCAAGAAGATACGCAGGAAAAAGGAATTTCGAGCAGATGCTCGGGCTGTCATTTCGCTGATGGAGA
TGGGCTTTGACGAGAAGGAAGTGATTGATGCCCTCCGAGTGAACAACAACCAGCAGAACGCTGCTTGTGA
ATGGCTGCTGGGGGACCGGAAGCCATCCCCTGAGGAATTGGACCAGGGCATCGATCCCAATAGCCCTCTC
TTTCAGGCCATCCTGGACAACCCAGTGGTGCAGCTGGGTTTGACAAACCCTAAGACATTGCTAGCATTTG
AAGACATGCTGGAGAATCCGCTTAACAGCACCCAGTGGATGAACGACCCAGAGACGGGCCCGGTCATGCT
GCAGATCTCTAGGATCTTCCAGACGCTGAATCGCACGTAG

Translation (409 aa):
MFVQEEKIFAGKVLRLHICAADGAEWLEEATEDTSVEKLKESCLKHGAHGSLEDPKNVTHHKLIHAASER
VLSDSKTILEENIQDQDVLLLIKKRVPSPLPKMADVSAEEKKKQEQKAPDKDAILRATANLPACSTDRTA
VQTTMRDFQTELRKILVSLIEVAQKLLALNPDAVELFKKANAMLDEDEDERVDETALRQLTEMGFPESRA
SKALRLNHMSVPQAMEWLIEHSEDPAIDTPLPGHAAQAGASAAATTSSTSSEAAVGTSVEDEESRDELTE
IFKKIRRKKEFRADARAVISLMEMGFDEKEVIDALRVNNNQQNAACEWLLGDRKPSPEELDQGIDPNSPL
FQAILDNPVVQLGLTNPKTLLAFEDMLENPLNSTQWMNDPETGPVMLQISRIFQTLNRT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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