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Report for CCDS15704.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15704.2 Reviewed, update pending Mus musculus 2 Arl5b 23 108 98 CCDS HistoryNCBI Gene:75869Re-query CCDS DB by CCDS ID:15704.2Re-query CCDS DB by GeneID:75869See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 15704.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000069870.10 ENSMUSP00000069725.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000069870.10Link to Ensembl Protein Viewer:ENSMUSP00000069725.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000069870Re-query CCDS DB by Protein ID:ENSMUSP00000069725
Original member Current member NCBI NM_029466.5 NP_083742.3 Pending alive Link to Nucleotide Sequence:NM_029466.5Link to Protein Sequence:NP_083742.3Re-query CCDS DB by Nucleotide ID:NM_029466Re-query CCDS DB by Protein ID:NP_083742Link to BLAST:NP_083742.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083742.3 179 Q9D4P0 179 100% 0 0

Chromosomal Locations for CCDS 15704.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 15055529 15055574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 15068139 15068199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 15069820 15069967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 15073124 15073207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 15074962 15075113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 15076256 15076304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (540 nt):
ATGGGGCTGATCTTCGCTAAACTGTGGAGCCTTTTTTGTAACCAAGAGCACAAAGTAATCATTGTGGGAC
TGGATAACGCGGGGAAAACCACCATTCTGTATCAGTTCTTAATGAATGAAGTAGTTCATACTTCTCCAAC
CATAGGAAGCAATGTTGAAGAAATCGTTGTGAAGAACACTCATTTCCTTATGTGGGATATCGGTGGTCAA
GAATCTCTGAGGTCATCCTGGAACACCTATTACTCAAACACAGAGTTCATCATTCTTGTTGTGGATAGCA
TTGACAGGGAACGCCTGGCTATTACGAAAGAAGAATTATACAGAATGTTGGCCCATGAGGATTTAAGGAA
AGCTGCAGTCCTTATCTTTGCAAATAAACAGGATATGAAAGGGTGCATGACAGCAGCTGAAATCTCCAAA
TACCTCACCCTAAGTTCAATCAAGGACCACCCGTGGCACATCCAGTCGTGCTGTGCGCTCACAGGAGAAG
GGTTGTGCCAAGGTCTAGAGTGGATGACCTCCAGGATTGGTGTGAGATAA

Translation (179 aa):
MGLIFAKLWSLFCNQEHKVIIVGLDNAGKTTILYQFLMNEVVHTSPTIGSNVEEIVVKNTHFLMWDIGGQ
ESLRSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAHEDLRKAAVLIFANKQDMKGCMTAAEISK
YLTLSSIKDHPWHIQSCCALTGEGLCQGLEWMTSRIGVR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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