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Report for CCDS15599.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15599.1 Public Mus musculus 1 Slc30a10 23 108 98 CCDS HistoryNCBI Gene:226781Re-query CCDS DB by CCDS ID:15599.1Re-query CCDS DB by GeneID:226781See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15599.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000061093.6 ENSMUSP00000053181.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000061093.6Link to Ensembl Protein Viewer:ENSMUSP00000053181.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000061093Re-query CCDS DB by Protein ID:ENSMUSP00000053181
Original member Current member NCBI NM_001033286.2 NP_001028458.1 Accepted alive Link to Nucleotide Sequence:NM_001033286.2Link to Protein Sequence:NP_001028458.1Re-query CCDS DB by Nucleotide ID:NM_001033286Re-query CCDS DB by Protein ID:NP_001028458Link to BLAST:NP_001028458.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028458.1 470 Q3UVU3-1 470 100% 0 0

Chromosomal Locations for CCDS 15599.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 185455064 185455679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 185456352 185456429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 185462687 185462926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 185464077 185464555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1413 nt):
ATGGGCCGTTACTCAGGCAAGACGTGCCGGCTGCTGTTCATGCTGGTGCTCACCGCGGCCTTCTTCGTGG
CCGAGCTGGTGTCGGGTTACCTGGGCAACTCCATCGCGCTGCTCTCGGACTCGTTCAACATGCTGTCAGA
CCTGATCTCGCTGTGCGTGGGCCTGGGCTCCGGCTACATCGCGCGGCGCGGTCCCCGCGGCTCCAGTGCC
ACCTACGGCTACGTGCGGGCCGAGGTGGTGGGCGCGCTCAGCAACGCAGTCTTCCTCACTGCGCTCTGCT
TCACCATCTTCGTGGAGGCCGTGTTGCGCCTTGCGCGGCCCGAGCGCATCGACGACCCGGAGCTGGTGCT
TATCGTGGGAGCCCTGGGGCTGGCGGTCAACGTGGTGGGGCTGCTCATCTTCCAGGACTGCGGCGCCTGC
TTCTCCCGCTGCACGCGGGGTCGCCGGACCCGCCCTTCGCAGCAGCCAAGCCAGGGGGATCCTCGTGGCG
CTTTGGGGTGTCCCCAAGAGGCTGCGACAGCCACAGCTCCTGGCTCGGGCACAGCAGTGACTCTCCGGGG
GTCCTCGGCCGGAAGAAAGCAGCAGGAGGGCGCGACCGTGTTCTCTAATGTAGCAGGTGATTCCCTGAAC
ACCGAGAATGAACCAGAAGAGACGACGAAAAAAGAGAAGAAGTCTGAAGCACTCAATATCAGAGGTGTTC
TTTTGCACGTGATGGGAGATGCCTTGGGGTCCGTGGTTGTGGTCATCACGGCTATCATATTCTATGTTCA
GCCCCTGAGACGTGAAGACCCGTGTAACTGGCAGTGCTACATTGACCCCAGTTTGACTGTTGTCATGGTC
ATCATTATCTTATCGTCAGCTTTCCCACTGATCAAAGAGACTGCTGTCATCTTGCTGCAGATGGTCCCCA
AGGGGGTCAACATGGAAGAGCTGATGAGCCAGCTGTCTACCGTGCCTGGGATTAGCAGTGTGCATGAAGT
GCACATCTGGGAACTTATAAGTGGGAAGATCATTGCCACCTTGCACATCAAACACCAGAAGGGCACGGAA
TACCAGGATGCCAGCAGAAAAATCCGAGAGATCTTCCACCATGCTGGAATCCACAACGTGACTATCCAGT
TCGAAACCCTGGACTTGAAGGAAGCCCTGGAGCAGAAGGACTTCTTGCTGACCTGCAGTGCTCCCTGCAT
CACCCAGAGCTGCGCTAAGAAGCTGTGCTGTCCCCCGGGGACACTGCCTCTGGCTCTCGTCAACGGTTGT
GCAGAGCACAATGGCAGGTCCTCTCGAGAGTCTTACCGAAGCATAGAAGCTCCAGAAGTGGCCATCGATG
TGGATGGCTGTCCAAGGGAGCAGGGACAGACTCTCAGCAAGACTCAGGAGAGACAACATTATGAAAACAG
TACTCATTTTTAG

Translation (470 aa):
MGRYSGKTCRLLFMLVLTAAFFVAELVSGYLGNSIALLSDSFNMLSDLISLCVGLGSGYIARRGPRGSSA
TYGYVRAEVVGALSNAVFLTALCFTIFVEAVLRLARPERIDDPELVLIVGALGLAVNVVGLLIFQDCGAC
FSRCTRGRRTRPSQQPSQGDPRGALGCPQEAATATAPGSGTAVTLRGSSAGRKQQEGATVFSNVAGDSLN
TENEPEETTKKEKKSEALNIRGVLLHVMGDALGSVVVVITAIIFYVQPLRREDPCNWQCYIDPSLTVVMV
IIILSSAFPLIKETAVILLQMVPKGVNMEELMSQLSTVPGISSVHEVHIWELISGKIIATLHIKHQKGTE
YQDASRKIREIFHHAGIHNVTIQFETLDLKEALEQKDFLLTCSAPCITQSCAKKLCCPPGTLPLALVNGC
AEHNGRSSRESYRSIEAPEVAIDVDGCPREQGQTLSKTQERQHYENSTHF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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