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Report for CCDS15549.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15549.1 Public Mus musculus 1 Opn3 23 108 98 CCDS HistoryNCBI Gene:13603Re-query CCDS DB by CCDS ID:15549.1Re-query CCDS DB by GeneID:13603See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15549.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027809.7 ENSMUSP00000027809.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027809.7Link to Ensembl Protein Viewer:ENSMUSP00000027809.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000027809Re-query CCDS DB by Protein ID:ENSMUSP00000027809
Original member NCBI NM_010098.3 NP_034228.1 Updated not alive Link to Nucleotide Sequence:NM_010098.3Link to Protein Sequence:NP_034228.1Re-query CCDS DB by Nucleotide ID:NM_010098Re-query CCDS DB by Protein ID:NP_034228
Current member NCBI NM_010098.4 NP_034228.1 Accepted alive Link to Nucleotide Sequence:NM_010098.4Link to Protein Sequence:NP_034228.1Re-query CCDS DB by Nucleotide ID:NM_010098Re-query CCDS DB by Protein ID:NP_034228Link to BLAST:NP_034228.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034228.1 400 Q9WUK7 400 100% 0 0

Chromosomal Locations for CCDS 15549.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 175662891 175663154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 175663527 175663778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 175665310 175665629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 175692170 175692536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1203 nt):
ATGTACTCGGGGAACCGTAGTGGCGACCAGGGCTACTGGGAGGACGGGGCGGGCGCCGAGGGCGCAGCAC
CGGCGGGCACGCGGAGCCCCGCGCCTCTCTTCAGCCCCACCGCGTACGAGCGCCTGGCGCTGCTACTCGG
CTGCCTCGCGCTGCTGGGCGTCGGCGGCAACCTGCTGGTGCTGCTTCTCTACTCCAAGTTCCCGAGACTG
CGCACGCCCACCCACCTCTTCCTGGTCAACCTGAGCCTGGGCGACCTGCTGGTATCCCTGTTCGGAGTCA
CCTTCACCTTCGCGTCGTGCCTGCGGAACGGCTGGGTGTGGGACGCCGTGGGCTGCGCGTGGGACGGGTT
TAGCGGCAGCCTCTTTGGGTTCGTTTCCATTACCACCCTCACTGTGCTGGCCTATGAACGTTATATCCGT
GTGGTACATGCCAGAGTGATCAACTTTTCCTGGGCCTGGAGGGCCATTACCTATATCTGGCTCTACTCCT
TGGCATGGGCAGGAGCACCTCTCCTGGGCTGGAACAGGTACATCCTAGACATACATGGACTGGGCTGTAC
CGTGGACTGGAGATCCAAGGATGCCAACGACTCTTCCTTTGTGCTCTTCCTGTTTCTCGGCTGCCTGGTG
GTGCCCGTGGGCATCATAGCCCATTGCTACGGCCACATTCTCTATTCTGTTCGAATGCTTCGCTGTGTTG
AAGATCTTCAGACCATTCAAGTGATCAAGATGCTAAGATATGAAAAGAAAGTAGCAAAGATGTGCTTTTT
GATGGCCTTTGTCTTTCTCACCTGCTGGATGCCTTACATTGTGACCCGCTTCTTGGTGGTCAATGGCTAT
GGACACCTGGTCACCCCAACTGTGTCCATTGTTTCTTATCTCTTTGCTAAATCGAGCACTGTGTACAACC
CAGTTATCTACATCTTCATGAACAGAAAGTTTCGGAGGTCCCTTCTGCAGCTCCTATGCTTCCGCCTGCT
GAGATGCCAGCGGCCTGCTAAAAACCTCCCAGCGGCTGAGAGTGAAATGCACATCAGGCCCATCGTGATG
TCACAGAAAGATGGGGACAGGCCAAAGAAGAAAGTGACCTTTAACTCTTCCTCTATCATCTTTATCATCA
CCAGTGATGAGTCCCTGTCAGTCGAGGACAGTGACAGAAGCAGCGCATCTAAGGTCGATGTCATCCAAGT
GCGTCCTCTATAA

Translation (400 aa):
MYSGNRSGDQGYWEDGAGAEGAAPAGTRSPAPLFSPTAYERLALLLGCLALLGVGGNLLVLLLYSKFPRL
RTPTHLFLVNLSLGDLLVSLFGVTFTFASCLRNGWVWDAVGCAWDGFSGSLFGFVSITTLTVLAYERYIR
VVHARVINFSWAWRAITYIWLYSLAWAGAPLLGWNRYILDIHGLGCTVDWRSKDANDSSFVLFLFLGCLV
VPVGIIAHCYGHILYSVRMLRCVEDLQTIQVIKMLRYEKKVAKMCFLMAFVFLTCWMPYIVTRFLVVNGY
GHLVTPTVSIVSYLFAKSSTVYNPVIYIFMNRKFRRSLLQLLCFRLLRCQRPAKNLPAAESEMHIRPIVM
SQKDGDRPKKKVTFNSSSIIFIITSDESLSVEDSDRSSASKVDVIQVRPL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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