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Report for CCDS15528.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15528.1 Public Mus musculus 1 Cadm3 23 108 98 CCDS HistoryNCBI Gene:94332Re-query CCDS DB by CCDS ID:15528.1Re-query CCDS DB by GeneID:94332See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15528.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000111220.7 ENSMUSP00000106851.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111220.7Link to Ensembl Protein Viewer:ENSMUSP00000106851.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000111220Re-query CCDS DB by Protein ID:ENSMUSP00000106851
Original member NCBI NM_053199.3 NP_444429.1 Updated not alive Link to Nucleotide Sequence:NM_053199.3Link to Protein Sequence:NP_444429.1Re-query CCDS DB by Nucleotide ID:NM_053199Re-query CCDS DB by Protein ID:NP_444429
Current member NCBI NM_053199.4 NP_444429.1 Accepted alive Link to Nucleotide Sequence:NM_053199.4Link to Protein Sequence:NP_444429.1Re-query CCDS DB by Nucleotide ID:NM_053199Re-query CCDS DB by Protein ID:NP_444429Link to BLAST:NP_444429.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_444429.1 396 Q99N28 396 100% 0 0

Chromosomal Locations for CCDS 15528.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 173337021 173337139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 173338020 173338145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 173341054 173341223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 173341669 173341759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 173344320 173344490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 173344920 173345057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 173345745 173345897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 173346422 173346562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 173367413 173367494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1191 nt):
ATGGGGGCCCCTTCCGCCCTGCCCCTGCTCCTGCTCCTCGCCTGCTCCTGGGCGCCCGGCGGGGCCAATC
TTTCCCAGGACGATAGCCAGCCCTGGACATCTGATGAAACAGTTGTGGCTGGTGGCACAGTGGTTCTCAA
GTGTCAAGTAAAAGACCATGAAGACTCATCTCTGCAGTGGTCTAACCCTGCTCAGCAGACCCTATACTTC
GGGGAGAAGAGAGCCCTTCGAGATAATCGGATTCAGCTGGTTAGCTCTACTCCCCATGAGCTCAGCATCA
GCATCAGCAATGTGGCGCTGGCCGATGAGGGGGAGTACACGTGCTCCATCTTCACTATGCCTGTGCGAAC
CGCCAAGTCCCTTGTCACTGTGCTCGGAATCCCACAGAAACCCATAATCACTGGTTATAAGTCATCATTG
CGGGAAAAGGAGACAGCCACTCTAAATTGTCAGTCTTCTGGGAGCAAACCTGCAGCCCAGCTCACCTGGA
GGAAAGGTGACCAAGAACTCCACGGGGACCAAACACGAATCCAGGAAGATCCCAACGGGAAAACCTTCAC
TGTGAGCAGCTCAGTGTCATTCCAGGTTACCCGGGAGGATGATGGAGCAAACATCGTGTGCTCTGTGAAC
CATGAATCTCTGAAGGGAGCCGACAGATCCACTTCTCAGCGCATTGAAGTGTTATACACACCAACAGCCA
TGATTAGGCCAGAACCTGCTCATCCTCGAGAAGGCCAGAAGCTGTTGTTACATTGTGAGGGGCGTGGCAA
TCCAGTCCCCCAGCAGTACGTGTGGGTAAAGGAAGGCAGTGAGCCACCCCTCAAGATGACCCAAGAGAGT
GCTCTCATCTTCCCCTTTTTGAATAAGAGTGACAGTGGCACTTATGGCTGTACAGCCACAAGCAACATGG
GCAGCTATACAGCCTACTTCACCCTCAATGTCAACGACCCCAGTCCAGTGCCCTCGTCCTCCAGTACCTA
CCACGCCATCATTGGAGGGATTGTGGCTTTCATTGTCTTCCTGCTGCTCATTCTGCTCATTTTCCTTGGA
CACTATTTGATCCGGCACAAAGGAACCTACCTGACACACGAAGCGAAGGGTTCCGACGATGCTCCAGATG
CGGATACGGCCATCATCAACGCAGAAGGCGGGCAGTCAGGCGGGGATGACAAGAAGGAATATTTCATCTA
G

Translation (396 aa):
MGAPSALPLLLLLACSWAPGGANLSQDDSQPWTSDETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYF
GEKRALRDNRIQLVSSTPHELSISISNVALADEGEYTCSIFTMPVRTAKSLVTVLGIPQKPIITGYKSSL
REKETATLNCQSSGSKPAAQLTWRKGDQELHGDQTRIQEDPNGKTFTVSSSVSFQVTREDDGANIVCSVN
HESLKGADRSTSQRIEVLYTPTAMIRPEPAHPREGQKLLLHCEGRGNPVPQQYVWVKEGSEPPLKMTQES
ALIFPFLNKSDSGTYGCTATSNMGSYTAYFTLNVNDPSPVPSSSSTYHAIIGGIVAFIVFLLLILLIFLG
HYLIRHKGTYLTHEAKGSDDAPDADTAIINAEGGQSGGDDKKEYFI


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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