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Report for CCDS15481.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15481.1 Public Mus musculus 1 Tomm40l 23 108 98 CCDS HistoryNCBI Gene:641376Re-query CCDS DB by CCDS ID:15481.1Re-query CCDS DB by GeneID:641376See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15481.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000005817.8 ENSMUSP00000005817.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000005817.8Link to Ensembl Protein Viewer:ENSMUSP00000005817.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000005817Re-query CCDS DB by Protein ID:ENSMUSP00000005817
Original member Current member EBI ENSMUST00000111327.7 ENSMUSP00000106959.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111327.7Link to Ensembl Protein Viewer:ENSMUSP00000106959.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000111327Re-query CCDS DB by Protein ID:ENSMUSP00000106959
Original member NCBI NM_001037170.2 NP_001032247.1 Updated not alive Link to Nucleotide Sequence:NM_001037170.2Link to Protein Sequence:NP_001032247.1Re-query CCDS DB by Nucleotide ID:NM_001037170Re-query CCDS DB by Protein ID:NP_001032247
Current member NCBI NM_001037170.3 NP_001032247.1 Accepted alive Link to Nucleotide Sequence:NM_001037170.3Link to Protein Sequence:NP_001032247.1Re-query CCDS DB by Nucleotide ID:NM_001037170Re-query CCDS DB by Protein ID:NP_001032247Link to BLAST:NP_001032247.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001032247.1 308 Q9CZR3 308 100% 0 0

Chromosomal Locations for CCDS 15481.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 171219521 171219660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171219794 171219896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171220109 171220185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171220301 171220423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171220547 171220652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171220805 171220906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171221168 171221260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171221572 171221639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171221904 171222018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (927 nt):
ATGGGGAACACCCTGGGCCTGGCACCGATGGGTACTTTACCCCGCCGGAGCCACCGTCGAGAGGAACCGC
TGCCCAACCCCGGGAGCTTCGACGAGCTGCACCGGTTGTGCAAAGATGTATTCCCAGCACAGATGGAAGG
CGTGAAGCTGGTTGTCAACAAGGTTCTGAGCAGCCATTTCCAGGTGGCTCATACTGTGCACATGAGTGCC
CTGGGCTTGCCAGGGTACCACCTCCATACCGCCTATGCAGGGGACTGGCAGCTTAGCCCCACAGAGGTGT
TCCCCACTGTGGTGGGGGATATGGACAGCAGTGGCAGTCTCAACGCCCAGGTCTTGCTTCTGTTGGCAGA
ACGGCTGCGAGCTAAGGCTGTCTTCCAGACACAGCAGGCCAAGTTCCTGACATGGCAGTTTGATGGCGAG
TATCGGGGAGATGACTACACAGCCACTCTGACCCTGGGAAATCCGGATCTGATTGGGGAATCAGTGATCA
TGGTTGCTCACTTCCTGCAGAGCATCACCCATCGGCTTGTGCTAGGAGGAGAGCTAGTTTATCACCGGCG
GCCAGGAGAAGAGGGGGCCATCTTGACTCTGGCTGGGAAGTACTCAGCTGTCCACTGGGTAGCTACGTTG
AATGTTGGGTCAGGTGGGGCCCATGCAAGTTATTACCACAAGGCCAATGAACAGGTTCAGGTTGGAGTAG
AGTTTGAGGCAAATACAAGGCTACAAGATACGACCTTCTCCTTTGGTTACCACCTGACTCTGCCCCAGGC
CGATATGGTGTTTAGAGGCTTGGTGGACAGTAACTGGTGTGTTGGTGCGGTGCTGGAGAAGAAGATGCGT
CCCCTGCCTGTCACCCTAGCCCTTGGAGCCTTCCTCAATCACTGGCGAAACAGATTCCATTGCGGCTTCA
GCATCACTGTGGGCTGA

Translation (308 aa):
MGNTLGLAPMGTLPRRSHRREEPLPNPGSFDELHRLCKDVFPAQMEGVKLVVNKVLSSHFQVAHTVHMSA
LGLPGYHLHTAYAGDWQLSPTEVFPTVVGDMDSSGSLNAQVLLLLAERLRAKAVFQTQQAKFLTWQFDGE
YRGDDYTATLTLGNPDLIGESVIMVAHFLQSITHRLVLGGELVYHRRPGEEGAILTLAGKYSAVHWVATL
NVGSGGAHASYYHKANEQVQVGVEFEANTRLQDTTFSFGYHLTLPQADMVFRGLVDSNWCVGAVLEKKMR
PLPVTLALGAFLNHWRNRFHCGFSITVG


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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