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Report for CCDS15443.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15443.1 Public Mus musculus 1 Cd247 23 108 98 CCDS HistoryNCBI Gene:12503Re-query CCDS DB by CCDS ID:15443.1Re-query CCDS DB by GeneID:12503See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15443.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027849.10 ENSMUSP00000027849.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027849.10Link to Ensembl Protein Viewer:ENSMUSP00000027849.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000027849Re-query CCDS DB by Protein ID:ENSMUSP00000027849
Original member Current member EBI ENSMUST00000086002.10 ENSMUSP00000083165.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000086002.10Link to Ensembl Protein Viewer:ENSMUSP00000083165.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000086002Re-query CCDS DB by Protein ID:ENSMUSP00000083165
Original member Current member EBI ENSMUST00000187313.6 ENSMUSP00000140926.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000187313.6Link to Ensembl Protein Viewer:ENSMUSP00000140926.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000187313Re-query CCDS DB by Protein ID:ENSMUSP00000140926
Original member Current member NCBI NM_031162.4 NP_112439.1 Accepted alive Link to Nucleotide Sequence:NM_031162.4Link to Protein Sequence:NP_112439.1Re-query CCDS DB by Nucleotide ID:NM_031162Re-query CCDS DB by Protein ID:NP_112439Link to BLAST:NP_112439.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_112439.1 206 P24161-2 206 100% 0 0

Chromosomal Locations for CCDS 15443.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 165788829 165788886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 165855166 165855269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 165856400 165856456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 165857416 165857496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 165858443 165858478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 165859219 165859275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 165859789 165859824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 165866655 165866846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (621 nt):
ATGAAGTGGAAAGTGTCTGTTCTCGCCTGCATCCTCCACGTGCGGTTCCCAGGAGCAGAGGCACAGAGCT
TTGGTCTGCTGGATCCCAAACTCTGCTACTTGCTAGATGGAATCCTCTTCATCTACGGAGTCATCATCAC
AGCCCTGTACCTGAGAGCAAAATTCAGCAGGAGTGCAGAGACTGCTGCCAACCTGCAGGACCCCAACCAG
CTCTACAATGAGCTCAATCTAGGGCGAAGAGAGGAATATGACGTCTTGGAGAAGAAGCGGGCTCGGGATC
CAGAGATGGGAGGCAAACAGCAGAGGAGGAGGAACCCCCAGGAAGGCGTATACAATGCACTGCAGAAAGA
CAAGATGGCAGAAGCCTACAGTGAGATCGGCACAAAAGGCGAGAGGCGGAGAGGCAAGGGGCACGATGGC
CTTTACCAGGACAGCCACTTCCAAGCAGTGCAGTTCGGGAACAGAAGAGAGAGAGAAGGTTCAGAACTCA
CAAGGACCCTTGGGTTAAGAGCCCGCCCCAAAGGTGAAAGCACCCAGCAGAGTAGCCAATCCTGTGCCAG
CGTCTTCAGCATCCCCACTCTGTGGAGTCCATGGCCACCCAGTAGCAGCTCCCAGCTCTAA

Translation (206 aa):
MKWKVSVLACILHVRFPGAEAQSFGLLDPKLCYLLDGILFIYGVIITALYLRAKFSRSAETAANLQDPNQ
LYNELNLGRREEYDVLEKKRARDPEMGGKQQRRRNPQEGVYNALQKDKMAEAYSEIGTKGERRRGKGHDG
LYQDSHFQAVQFGNRREREGSELTRTLGLRARPKGESTQQSSQSCASVFSIPTLWSPWPPSSSSQL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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