NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS15440.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15440.1 Public Mus musculus 1 Sft2d2 23 108 98 CCDS HistoryNCBI Gene:108735Re-query CCDS DB by CCDS ID:15440.1Re-query CCDS DB by GeneID:108735See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15440.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000043338.9 ENSMUSP00000043537.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000043338.9Link to Ensembl Protein Viewer:ENSMUSP00000043537.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000043338Re-query CCDS DB by Protein ID:ENSMUSP00000043537
Original member Current member NCBI NM_145512.4 NP_663487.1 Accepted alive Link to Nucleotide Sequence:NM_145512.4Link to Protein Sequence:NP_663487.1Re-query CCDS DB by Nucleotide ID:NM_145512Re-query CCDS DB by Protein ID:NP_663487Link to BLAST:NP_663487.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_663487.1 159 Q8VD57 159 100% 0 0

Chromosomal Locations for CCDS 15440.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 165179256 165179295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 165182052 165182081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 165183827 165183882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 165183970 165184005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 165185008 165185089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 165187969 165188054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 165188248 165188334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 165194240 165194302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (480 nt):
ATGGACAAGCTGAAGAAAGTTCTGAGCGGCCAGGACACCGAGGACCGCAGCGGTCTGTCCGAGGTTGTGG
AGGCGTCGTCGCTGAGCTGGGGCACCAGAATAAAAGGCTTCATCGCATGCTTTGCTCTGGGAATCCTGTG
CTCAGTGCTGGGGACTCTTCTGCTGTGGGTGCCCAGGAAGGGACTCGGCCTCTTTGCAGTGTTTTACACC
CTGGGTAACATCATGTCAATTGGGAGTACCGTCTTCCTCATGGGGCCGCTGAAGCAGCTGAAGCGCATGT
TTGAGCCTACGCGTCTCATCGCCACAATTCTGGTGCTGCTGTGTTTTGCACTTACCCTGTGTTCTGCCTT
TTTGTGGAATAAGGGACTTGCACTCATCTTCTGTATTTTGCAGTCTTTGGCCTTGACGTGGTATAGCCTT
TCCTATATACCGTATGCAAGGGATGCCGTGAAGAAGTGCTTTGCTGTGTGTCTTGCATAA

Translation (159 aa):
MDKLKKVLSGQDTEDRSGLSEVVEASSLSWGTRIKGFIACFALGILCSVLGTLLLWVPRKGLGLFAVFYT
LGNIMSIGSTVFLMGPLKQLKRMFEPTRLIATILVLLCFALTLCSAFLWNKGLALIFCILQSLALTWYSL
SYIPYARDAVKKCFAVCLA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH