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Report for CCDS15429.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15429.1 Public Mus musculus 1 Gorab 23 108 98 CCDS HistoryNCBI Gene:98376Re-query CCDS DB by CCDS ID:15429.1Re-query CCDS DB by GeneID:98376See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15429.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000045138.5 ENSMUSP00000036253.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000045138.5Link to Ensembl Protein Viewer:ENSMUSP00000036253.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000045138Re-query CCDS DB by Protein ID:ENSMUSP00000036253
Original member Current member NCBI NM_178883.6 NP_849214.2 Accepted alive Link to Nucleotide Sequence:NM_178883.6Link to Protein Sequence:NP_849214.2Re-query CCDS DB by Nucleotide ID:NM_178883Re-query CCDS DB by Protein ID:NP_849214Link to BLAST:NP_849214.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_849214.2 368 Q8BRM2-1 368 100% 0 0

Chromosomal Locations for CCDS 15429.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 163386253 163386697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 163392410 163392550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 163394591 163394692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 163396812 163397169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 163403523 163403583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1107 nt):
ATGGCTCAGGATTGGGCGGGCTTCTCTGAGGAAGAGCTGAGGAGACTAAAGCAGAATAAAGATCCATTTG
AACCTCAGCGTCGAATTCCTGTGAAGAAAACTCGACAACAGCTTCAGCGTGAAAAAGCCCTTCTAGAGCA
GAGCCAAAAGCTTGGCCTCCAAGATGGGTCAGCCTCATTGCTTCCAGAGCAGCTGCTCTCTGCACCCAAA
CAGAGAGCTAACAGTCAAAAGCCACGCTCTCCTTCCCCTGTGGCCCCCAGTCCCCTCACACCCACCTCTT
CCTCTGGCGATGGAAAGCTACCTGGTGTTGGAAGTCAGCCCCAAGAACCAGGACTTGAGAATTCCCACCA
TGGTCACAAAAGTGCCGAGGTTCGAGCTCCAAAGCCAGATTGCAAAGTGGAGAAAAAGAAAATGGAATTG
CAAGAGAAATCTCGTTGGGAAGTCCTCCAACAAGAACAGCGACTAATGGAAGAGAAAAATAAACGTAAGA
AAGCCCTTTTGGCTCAAGCCATTGCGGAAAGATCTAAGAAGACCCAAGCAGAGACCATAAAACTAAAGAG
GATCCAGAAGGAGTTGCAGGCCTTAGACGACATGGTGTCAGCTGACATTGGCATCCTCAGGAACAGAATC
GACCAGGCCAGCCTGGAGTATTCCTACGCACGGAAGCGCTTTGATAGAGCTGAAGCTGAGTACATTACAG
CAAAGCTGGATTTACAGCGCAAAACCGAGACGAAAGAGCAGCTCACCGAACACCTCTGCACCATCATCCA
GCAGAACGAGCTCCGAAAGGCCAAGAAGCTGGAGGAGCTGATGCAGCAGCTGGACGTGCAGGCTGATGAG
GAGGCTTTGCAACTCGAGGTGGAGGTTGAACAGTTGCTTCGGGAACAGGAAGCAGAGGCAGCCAAACAAA
TGGCTTCTGTAGAGAGGCTGTGTCCGCCTGATGGCGAGAGTGTGTCTTCAGAACTGGCTGAAGAGAACAA
TGAGCCTCAAAAGCAAGCTCCTTCCCCAGAGACAGACAAGCCAGGCAAATGTTGCAGTAGCTCTCCCCAT
AGACTAGACTGCCCAGATCCAGGAGCCAAGAACTTTTCAGCTGCTGTGGCCACATGA

Translation (368 aa):
MAQDWAGFSEEELRRLKQNKDPFEPQRRIPVKKTRQQLQREKALLEQSQKLGLQDGSASLLPEQLLSAPK
QRANSQKPRSPSPVAPSPLTPTSSSGDGKLPGVGSQPQEPGLENSHHGHKSAEVRAPKPDCKVEKKKMEL
QEKSRWEVLQQEQRLMEEKNKRKKALLAQAIAERSKKTQAETIKLKRIQKELQALDDMVSADIGILRNRI
DQASLEYSYARKRFDRAEAEYITAKLDLQRKTETKEQLTEHLCTIIQQNELRKAKKLEELMQQLDVQADE
EALQLEVEVEQLLREQEAEAAKQMASVERLCPPDGESVSSELAEENNEPQKQAPSPETDKPGKCCSSSPH
RLDCPDPGAKNFSAAVAT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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