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Report for CCDS15420.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15420.1 Public Mus musculus 1 Mettl13 23 108 98 CCDS HistoryNCBI Gene:71449Re-query CCDS DB by CCDS ID:15420.1Re-query CCDS DB by GeneID:71449See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15420.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028017.15 ENSMUSP00000028017.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028017.15Link to Ensembl Protein Viewer:ENSMUSP00000028017.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000028017Re-query CCDS DB by Protein ID:ENSMUSP00000028017
Original member NCBI NM_144877.1 NP_659126.1 Updated not alive Link to Nucleotide Sequence:NM_144877.1Link to Protein Sequence:NP_659126.1Re-query CCDS DB by Nucleotide ID:NM_144877Re-query CCDS DB by Protein ID:NP_659126
Current member NCBI NM_144877.2 NP_659126.1 Accepted alive Link to Nucleotide Sequence:NM_144877.2Link to Protein Sequence:NP_659126.1Re-query CCDS DB by Nucleotide ID:NM_144877Re-query CCDS DB by Protein ID:NP_659126Link to BLAST:NP_659126.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_659126.1 698 Q91YR5-3 698 100% 0 0

Chromosomal Locations for CCDS 15420.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 162534276 162534550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 162535842 162535973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 162537119 162537331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 162538832 162538999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 162542258 162542453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 162544186 162544385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 162545768 162546527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 162548104 162548256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2097 nt):
ATGAATCTCCTACCTAAAAGCTCCAAGGAGTTTGGCTCTGCCGACTACTGGGAGAAGTTCTTCCAGCAGC
GAGGGAAGACAGCTTTCGAGTGGTATGGGACCTATCTGGAGCTGTGCGAGGTGCTGCACAAATACATAAA
GCCCAAGGAAAAGGTGCTTGTGATCGGATGTGGCAACTCAGAGCTCAGTGAACAACTCTATGATGTGGGC
TATCAGGATATCGTGAACATCGACATCAGCGAGGTTGTCATCAAGCAGATGAAGGAACGCAATGGCAGCC
GACGGCCCCACATGAGTTTCCTGAAGATGGACATGACCCAGCTGGAGTTTCCTGACGCCACATTCCAGGT
GGTGTTGGACAAGGGCACGCTGGATGCTGTCCTGACAGATGAGGAGGAGGTGACCCTGCGTCAGGTGGAC
AGGATGCTAGCTGAGGTTGGCCGTGTCCTGCAGGTGGGCGGTCGCTACCTCTGCATCTCCCTGGCTCAGG
CTCACATCCTGAAGAAAGCAGTGGGCCACTTCTCTCGGGAGGGGTGGATGGTGAGGGCACACCAAGTGGC
CAGCAGCCAGGACCGGGTGTCTGAAGCCGAGCCCCGCTTCTCCCTGCCCGTCTTTGCCTTCGTCATGACT
AAGTTCAGGCCAGTCCCTGGCTCTGCCCTTCAGATCTTTGAGCTGTGTACTCAGGAGCAGGGCAAGCCCG
TAAGGCTGGAGAGTGCTGATCAGCTGGCGGAGGCTGTGCGGGAGCGCCAGTACTATGCTTGGCTGTGTAG
TCAGCTGCGCCGCAAAGCCGGGCTGGGGAGTGTGTCCCTGGACTTGTGCAGTGGGGACACGGGGGAGCCA
CGCTACACCCTCCACGTGGTGGACAACCCCGCTGTGAAACCATCGCGGGACAATCATTTTGCCATTTTCA
TCATCCCCCAGGGTCGCGAGACCGAGTGGCTCTTTGGCATGGAGGAGGGCCGGAAGCAGCTGGCAGCCAG
TGCGGGCTTCAGGAGGTTGGTCACAGTGGCTCTCCACCGAGGCCAGCGGTATGCTGGCATGGAAAGCATT
CAAGCAGAGTTGTCAGCCAGAGTCATGGAGCTGGCCCCGGCTGGGTTGCCTCCCCAGCAGCAGGTGCCCT
TCCTGTCTGTGGGTGGGGACATTGGGGTCCGGACTGTGCAGCACCAAGACCACAGTGCCTTGAGTGGTGA
CTATGTTATTGAGGATGTGCAAGGGGAAGACAGATGGTACTTTCGGCGGCTCATCTTCCTCAGCAACAGG
AACGTGGTGCAGTCGGAAGCCAGGCTGCTGAAGGATACGTCTCACAGAGCCCAGAAGAAACGGAAAAAGG
ACAGGAAAAAACAGCGACCTGCTGATACTTCTGAGGACTTCCCGCCTGCCCCAGGGCAGTCCATCGATAA
GAGTTACCTGTGCTGTGAACACCATAAAGCCATGGTTGCTGGCCTTGCCCTGCTGAGAAACCCCGAGCTA
CTCTTAGAGACTCCACTGACATTGCTGGTGGTGGGTCTGGGTGGAGGTAGCCTCCCTCTCTTCGTTCACG
ATCATTTCCCGAAGTCCCGCATCGATGCTGTTGAGATTGACCCCACAATGTTGGAAGTGGCCACTCAGTG
GTTTGGCTTCTCACAGAGCGACCGGATGAAGGTTCACATTGCAGATGGTCTTGACTACATTACCAGCCTG
GCAGGAGAAGCGCCGCCTCACTATGATGTGATAATGTTTGATGTAGACAGTAAGGATCCGACGCTGGGGA
TGAGCTGTCCTCCCCCAGCATTTGTGGACCAAGTTTTCCTGCAGAAGGTCAAAAGCATCCTGTGTCACGA
CGGCGTCTTCATCCTTAACCTCGTGTGTCGGGACGTGAGGTTAAAGGACTCAGTGCTGGCTGGACTCAAG
GCAGCCTTCCCTCTCCTCTATGTCCGGCGGATTGAAGGCGAGGTGAATGAAATCCTGTTTTGTCAGCTGC
ATCCAGAACAGAAACTTGCTACACCAGAGCTCCTGGAAATGGCCCAGGTTTTGGAGCGGACCCTGCGGAA
GCCTGGGCAGGGTTGGGATGACACGTATGTTCTGTCAGATATGCTGAAGACTGTGAAGATTGTGTGA

Translation (698 aa):
MNLLPKSSKEFGSADYWEKFFQQRGKTAFEWYGTYLELCEVLHKYIKPKEKVLVIGCGNSELSEQLYDVG
YQDIVNIDISEVVIKQMKERNGSRRPHMSFLKMDMTQLEFPDATFQVVLDKGTLDAVLTDEEEVTLRQVD
RMLAEVGRVLQVGGRYLCISLAQAHILKKAVGHFSREGWMVRAHQVASSQDRVSEAEPRFSLPVFAFVMT
KFRPVPGSALQIFELCTQEQGKPVRLESADQLAEAVRERQYYAWLCSQLRRKAGLGSVSLDLCSGDTGEP
RYTLHVVDNPAVKPSRDNHFAIFIIPQGRETEWLFGMEEGRKQLAASAGFRRLVTVALHRGQRYAGMESI
QAELSARVMELAPAGLPPQQQVPFLSVGGDIGVRTVQHQDHSALSGDYVIEDVQGEDRWYFRRLIFLSNR
NVVQSEARLLKDTSHRAQKKRKKDRKKQRPADTSEDFPPAPGQSIDKSYLCCEHHKAMVAGLALLRNPEL
LLETPLTLLVVGLGGGSLPLFVHDHFPKSRIDAVEIDPTMLEVATQWFGFSQSDRMKVHIADGLDYITSL
AGEAPPHYDVIMFDVDSKDPTLGMSCPPPAFVDQVFLQKVKSILCHDGVFILNLVCRDVRLKDSVLAGLK
AAFPLLYVRRIEGEVNEILFCQLHPEQKLATPELLEMAQVLERTLRKPGQGWDDTYVLSDMLKTVKIV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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