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Report for CCDS15386.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15386.1 Public Mus musculus 1 Qsox1 23 108 98 CCDS HistoryNCBI Gene:104009Re-query CCDS DB by CCDS ID:15386.1Re-query CCDS DB by GeneID:104009See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15386.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000035325.14 ENSMUSP00000035658.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000035325.14Link to Ensembl Protein Viewer:ENSMUSP00000035658.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000035325Re-query CCDS DB by Protein ID:ENSMUSP00000035658
Original member Current member NCBI NM_001024945.1 NP_001020116.1 Accepted alive Link to Nucleotide Sequence:NM_001024945.1Link to Protein Sequence:NP_001020116.1Re-query CCDS DB by Nucleotide ID:NM_001024945Re-query CCDS DB by Protein ID:NP_001020116Link to BLAST:NP_001020116.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001020116.1 748 Q8BND5-1 748 100% 0 0

Chromosomal Locations for CCDS 15386.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 155779169 155779938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155781275 155781454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155782525 155782672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155783403 155783525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155786794 155786923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155789298 155789432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155790981 155791126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155792194 155792284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155794546 155794648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155795351 155795396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155803697 155803797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155812526 155812799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2247 nt):
ATGAGGAGGTGCGGCCGCCTCTCGGGGCCGCCATCGCTGCTGCTACTACTGCTGCTGCTCTCGCCTCTGC
TCTTCTCGGGGCCCGGCGCTTACGCGGCCCGGCTCTCAGTGCTCTACTCGTCCTCTGACCCGCTGACGCT
GCTGGATGCTGATTCGGTGCGTCCCACTGTGCTCGGCTCCAGCAGCGCCTGGGCGGTGGAGTTCTTCGCC
TCCTGGTGTGGCCACTGCATCGCCTTCGCCCCGACGTGGAAGGAGCTTGCTAACGACGTGAAAGACTGGA
GGCCAGCACTCAATCTTGCTGTCCTGGACTGTGCTGAGGAGACCAACAGTGCTGTCTGCAGAGAGTTCAA
CATCGCTGGCTTCCCGACTGTGAGGTTTTTTCAGGCCTTTACCAAGAACGGTTCTGGAGCGACACTGCCA
GGTGCTGGCGCTAATGTGCAGACTCTGCGTATGAGGCTCATCGATGCTCTGGAGTCCCACCGTGACACAT
GGCCCCCAGCCTGTCCACCTCTGGAACCTGCCAAGCTGAATGATATCGACGGATTCTTTACAAGAAATAA
AGCAGATTACCTGGCCCTGGTCTTTGAAAGGGAAGACTCCTACCTGGGTAGAGAGGTAACTCTGGACCTG
TCCCAGTACCATGCTGTGGCAGTGCGCAGGGTCTTGAATACAGAGAGTGACCTGGTGAACAAGTTTGGCG
TCACTGACTTCCCATCTTGTTACCTGCTGCTTCGGAATGGCTCTGTCTCCCGAGTGCCTGTGCTGGTGGA
GTCCAGGTCTTTCTATACATCCTATCTTCGGGGGCTACCTGGACTGACCAGGGATGCTCCCCCAACCACA
GCCACCCCAGTCACTGCTGATAAGATAGCACCCACAGTGTGGAAGTTTGCAGACCGCTCCAAGATCTACA
TGGCCGACCTGGAGTCCGCACTCCACTACATCTTGCGTGTAGAAGTGGGGAAGTTCTCAGTGCTGGAGGG
ACAGCGCCTGGTGGCCCTGAAAAAGTTTGTGGCAGTATTGGCCAAGTACTTCCCTGGGCAGCCTTTGGTC
CAGAACTTCTTGCATTCCATAAACGACTGGCTTCAGAAGCAGCAGAAGAAGAGGATCCCCTACAGTTTCT
TCAAAGCTGCTCTGGACAGCAGGAAGGAGGATGCTGTCCTTACTGAGAAGGTGAACTGGGTCGGCTGCCA
GGGCAGTGAGCCACACTTCCGGGGGTTTCCCTGCTCACTGTGGGTCCTCTTCCACTTCCTGACGGTGCAG
GCAAACCGATATAGTGAGGCCCACCCACAGGAACCAGCTGATGGCCAGGAGGTCCTCCAAGCCATGAGGA
GCTATGTTCAGTTCTTCTTTGGCTGTCGTGACTGTGCGGACCATTTTGAGCAGATGGCTGCAGCGTCCAT
GCACCAAGTGAGAAGTCCCAGTAATGCGATTCTTTGGCTCTGGACTAGCCACAACAGGGTTAACGCTCGC
CTCTCAGGTGCTCTGAGTGAGGACCCCCACTTCCCCAAGGTGCAGTGGCCTCCCCGTGAGCTGTGTTCTG
CCTGCCATAATGAACTCAACGGACAGGTGCCTTTGTGGGACCTTGGTGCCACCCTCAACTTTCTCAAGGC
TCACTTCTCCCCAGCAAACATCGTCATAGACTCTTCTGCATCTAGACACACAGGCCGGAGAGGGAGTCCA
GAAGCTACCCCCGAGCTGGTAATGGATACATTAAAACTGGAGAGCAGAAATTCAGTGTTGGGCCATGAGC
AGGCTGCTTCTGCAGAGTCCCCTGGAGCCACTGCCCTAGATGTACCAGCTGAGAAGCCTGAAGCAAGTGG
CCCCCAAGAACTATACACAGGCCTCAGAATGGGTGGAGCTTCACCAGGGCAGGGCCCTCCTGAGCGCATG
GAAGACCACCAGAGGGATATGCAGGAGAATGCCCCCGGGCAGCAACACTTGAGCAAGAGAGACACTGAAG
CCTTATTTCTGCCTGAGGTGAACCACCTCCAAGGCCCTTTAGAGCTCAGGCGAGGGGGCCGCAGCCCCAA
GCAACTAGCCCCCATACTTGAAGAGGAACCAGAGGCCCTAGCTATACAGGGCCAAGGCCAGTGGCTGCAG
GTTCTAGGAGGGGGCATTTCCCACCTGGACATTAGCCTCTGTGTGGGGCTCTACTCCGTGTCCTTCATGG
GCTTACTGGCCATGTACACCTACTTTCGGGCCAGGCTGAGAACCCCAAAGGGCCATGCTAGTTACCCCAC
AGCCTGA

Translation (748 aa):
MRRCGRLSGPPSLLLLLLLLSPLLFSGPGAYAARLSVLYSSSDPLTLLDADSVRPTVLGSSSAWAVEFFA
SWCGHCIAFAPTWKELANDVKDWRPALNLAVLDCAEETNSAVCREFNIAGFPTVRFFQAFTKNGSGATLP
GAGANVQTLRMRLIDALESHRDTWPPACPPLEPAKLNDIDGFFTRNKADYLALVFEREDSYLGREVTLDL
SQYHAVAVRRVLNTESDLVNKFGVTDFPSCYLLLRNGSVSRVPVLVESRSFYTSYLRGLPGLTRDAPPTT
ATPVTADKIAPTVWKFADRSKIYMADLESALHYILRVEVGKFSVLEGQRLVALKKFVAVLAKYFPGQPLV
QNFLHSINDWLQKQQKKRIPYSFFKAALDSRKEDAVLTEKVNWVGCQGSEPHFRGFPCSLWVLFHFLTVQ
ANRYSEAHPQEPADGQEVLQAMRSYVQFFFGCRDCADHFEQMAAASMHQVRSPSNAILWLWTSHNRVNAR
LSGALSEDPHFPKVQWPPRELCSACHNELNGQVPLWDLGATLNFLKAHFSPANIVIDSSASRHTGRRGSP
EATPELVMDTLKLESRNSVLGHEQAASAESPGATALDVPAEKPEASGPQELYTGLRMGGASPGQGPPERM
EDHQRDMQENAPGQQHLSKRDTEALFLPEVNHLQGPLELRRGGRSPKQLAPILEEEPEALAIQGQGQWLQ
VLGGGISHLDISLCVGLYSVSFMGLLAMYTYFRARLRTPKGHASYPTA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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