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Report for CCDS15310.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15310.1 Public Mus musculus 1 Rabif 23 108 98 CCDS HistoryNCBI Gene:98710Re-query CCDS DB by CCDS ID:15310.1Re-query CCDS DB by GeneID:98710See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15310.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000047978.8 ENSMUSP00000038335.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000047978.8Link to Ensembl Protein Viewer:ENSMUSP00000038335.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000047978Re-query CCDS DB by Protein ID:ENSMUSP00000038335
Original member Current member NCBI NM_145510.2 NP_663485.1 Accepted alive Link to Nucleotide Sequence:NM_145510.2Link to Protein Sequence:NP_663485.1Re-query CCDS DB by Nucleotide ID:NM_145510Re-query CCDS DB by Protein ID:NP_663485Link to BLAST:NP_663485.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_663485.1 123 Q91X96 123 100% 0 0

Chromosomal Locations for CCDS 15310.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 134494684 134494809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134506076 134506321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (372 nt):
ATGGAACCCTGCGAGCTGCAGAACGAGCTCGTGTCAGCCGAGGGCCGGAACCGGAAGGCGGTGCTGTGCC
AGCGTTGTGGCTCTCGGGTGCTGCAGCCAGGGACTGCTCTTTTCTCTCGCCGGCAGCTCTTCCTCCCCTC
CATGAGAAAGAAGCCAGATCTGGCCGACGGCAGCAATCCTGATGGTGATCTCCTCCAGGAACACTGGCTG
GTTAATGACATGTTCACCTTTGAGAATGTGGGCTTCACCAAGGACGTGGGCAACATCAAGTTTCTGGTCT
GTGCAGACTGTGAGATTGGACCCATTGGCTGGCATTGCCTAGATGACAAGAACAGCTTCTATGTGGCCTT
GGAACGAGTTTCCCATGAGTAA

Translation (123 aa):
MEPCELQNELVSAEGRNRKAVLCQRCGSRVLQPGTALFSRRQLFLPSMRKKPDLADGSNPDGDLLQEHWL
VNDMFTFENVGFTKDVGNIKFLVCADCEIGPIGWHCLDDKNSFYVALERVSHE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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