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Report for CCDS15289.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15289.1 Public Mus musculus 1 Lrrn2 23 108 98 CCDS HistoryNCBI Gene:16980Re-query CCDS DB by CCDS ID:15289.1Re-query CCDS DB by GeneID:16980See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15289.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027706.3 ENSMUSP00000027706.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027706.3Link to Ensembl Protein Viewer:ENSMUSP00000027706.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000027706Re-query CCDS DB by Protein ID:ENSMUSP00000027706
Original member Current member NCBI NM_010732.4 NP_034862.1 Accepted alive Link to Nucleotide Sequence:NM_010732.4Link to Protein Sequence:NP_034862.1Re-query CCDS DB by Nucleotide ID:NM_010732Re-query CCDS DB by Protein ID:NP_034862Link to BLAST:NP_034862.1

Chromosomal Locations for CCDS 15289.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 132937199 132939391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2193 nt):
ATGAGGCTCCTCGTGGCTGCCCTCTTGCTATCTTGGGTGGCTGGTACCACCGCTGCAGCACCGGTGGTAC
CCTGGCGTGTGCCCTGCCCTCCTCAGTGTGCCTGCCAGATCCGGCCCTGGTACACACCCCGCTCGTCCTA
CCGTGAAGCCACCACTGTCGACTGCAATGACCTCTTCCTGACGGCAGTGCCCCCAAGGCTCCCTGCGGGG
ACACAGACCCTGCTCCTGCAGAGTAACAGCATCAGCCGGATAGACCAGACTGAGCTTGCCTACTTGGCCA
ACCTCACAGAGCTGGACCTGTCCCAGAACAGCTTCTCAGATGCCCGAGACTGCGATTTCCAAGCCCTGCC
TCAGCTGCTGAGCCTACATCTAGAAGAGAACCGGCTGAACCGGCTGGAGGATCACAGCTTCGCTGGGCTG
ACCAGCCTGCAGGAGCTCTATCTCAACCATAACCAGCTCTGCCGCATCTCCCCCAGGGCCTTTGCAGGGC
TGGGTAACCTGCTGAGACTGCACCTCAATTCCAACCTGCTTAGGACCATCGACAGCCGCTGGTTCGAGAT
GCTGCCCAACTTGGAAATCCTCATGATTGGCGGCAACAAGGTGGATGCCATCTTGGACATGAACTTCCGG
CCCCTGGCCAACCTGCGCAGCCTGGTGCTGGCAGGCATGAGCTTGCGGGAGATCTCAGACTACGCTCTGG
AGGGACTGCAAAGCCTGGAGAGTCTCTCTTTCTACGACAATCAGCTGGCCCAGGTGCCCAAGCGGGCATT
GGAGCAGGTGCCTGGGCTCAAGTTCCTAGACCTGAACAAAAACCCACTGCAGCGGGTCGGACCGGGAGAC
TTTGCCAACATGCTGCACCTCAAGGAACTAGGACTAAACAACATGGAGGAACTGGTCTCCATCGACAAGT
TTGCTCTGGTAAATCTCCCTGAGCTGACCAAGTTGGACATCACCAACAACCCACGGCTTTCTTTCATCCA
TCCTCGCGCCTTTCACCACCTGCCCCAGATGGAGACTCTCATGCTCAACAACAATGCTCTCAGTGCCTTG
CACCAGCAGACAGTGGAGTCTCTGCCCAACCTACAGGAGGTGGGGCTCCACGGCAACCCCATCCGCTGTG
ACTGTGTCATCCGCTGGGCCAACGCCACGGGCACCCACGTCCGTTTCATCGAACCACAGTCCACCCTGTG
TGCTGAGCCTCCAGACCTTCAGCGCCGCCCAGTCCGGGAGGTGCCCTTCCGGGAGATGACAGACCACTGC
CTGCCCCTCATCTCTCCCCGAAGTTTCCCCTCCAGTCTGCAGATAGCCAGTGGAGAGAGCACGGTACTTC
ACTGTCGGGCACTGGCTGAACCAGAACCTGAGATCTACTGGGTCACCCCAGCTGGAGTTCGACTGACACC
TGCTCGCTCAGGCAGGAGGTACCGAGTGTTCCCTGAGGGTACCCTAGAGTTGCGGAGGGTGACGGCGGAA
GAGGCAGGCCTATACACCTGTGTGGCCCAGAACTTGGTAGGGGCTGACACTAAAACCGTCAGTGTTGTGG
TTGGCCACGCTCCCTTCCAGCCAGGCAGGGACAAAGGACCAGGACTGAAGCTCCATGTGCAGGAGACACA
CCCATATCACATCCTGCTGTTTTGGGCACCCCCACCCAATATAGTCTCCACCAACCTCACCTGGTCTAGC
GCCTCCTCCCTCCGGGACCATGAAGCTCCTGCTTTGGCCCGACTGCCGCGGGGCACCCACCGCTACAACA
TTACCCGCCTCCTTCCGGCCACAGAGTACTGGGCCTGCCTGCAAGTGGCCTTTGCTGATGCCCACACCCA
GTTGGCTTGTGTTTGGGCCAGGACTAAAGAGGCCTCTCCTTGCCACAGAGCCCTGGGGGACCGGCCCGGG
CTCATAGCCATCCTGGCTCTTGCGGTCCTCCTGCTGGCAGCTGGGCTTGCAGCCCACCTCGGCAGAGGCC
AGTCCAAGCAGGGGGTGGTGGGTGAGAAGCCTCTTCTTCCGGTCTGGGCTTTCTGGGGCTGGAGCGCCCC
CTCTGTCCGGGTAGTGTCTGCACCCCTTGTCCTGCCCTGGAATCCAGGGAGGAAGCAGCCCAGATGTCAG
ATGGGGAGAGGGTGCCACCACCATTGTCTCAACATTGCTGAAGTTCCGCCAGGTCTCAGCAGTAGAGAAA
TAACTAGGACAACTCTACACTAA

Translation (730 aa):
MRLLVAALLLSWVAGTTAAAPVVPWRVPCPPQCACQIRPWYTPRSSYREATTVDCNDLFLTAVPPRLPAG
TQTLLLQSNSISRIDQTELAYLANLTELDLSQNSFSDARDCDFQALPQLLSLHLEENRLNRLEDHSFAGL
TSLQELYLNHNQLCRISPRAFAGLGNLLRLHLNSNLLRTIDSRWFEMLPNLEILMIGGNKVDAILDMNFR
PLANLRSLVLAGMSLREISDYALEGLQSLESLSFYDNQLAQVPKRALEQVPGLKFLDLNKNPLQRVGPGD
FANMLHLKELGLNNMEELVSIDKFALVNLPELTKLDITNNPRLSFIHPRAFHHLPQMETLMLNNNALSAL
HQQTVESLPNLQEVGLHGNPIRCDCVIRWANATGTHVRFIEPQSTLCAEPPDLQRRPVREVPFREMTDHC
LPLISPRSFPSSLQIASGESTVLHCRALAEPEPEIYWVTPAGVRLTPARSGRRYRVFPEGTLELRRVTAE
EAGLYTCVAQNLVGADTKTVSVVVGHAPFQPGRDKGPGLKLHVQETHPYHILLFWAPPPNIVSTNLTWSS
ASSLRDHEAPALARLPRGTHRYNITRLLPATEYWACLQVAFADAHTQLACVWARTKEASPCHRALGDRPG
LIAILALAVLLLAAGLAAHLGRGQSKQGVVGEKPLLPVWAFWGWSAPSVRVVSAPLVLPWNPGRKQPRCQ
MGRGCHHHCLNIAEVPPGLSSREITRTTLH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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