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Report for CCDS15260.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15260.1 Public Mus musculus 1 Pigr 23 108 98 CCDS HistoryNCBI Gene:18703Re-query CCDS DB by CCDS ID:15260.1Re-query CCDS DB by GeneID:18703See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15260.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027675.13 ENSMUSP00000027675.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027675.13Link to Ensembl Protein Viewer:ENSMUSP00000027675.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000027675Re-query CCDS DB by Protein ID:ENSMUSP00000027675
Original member Current member NCBI NM_011082.3 NP_035212.2 Accepted alive Link to Nucleotide Sequence:NM_011082.3Link to Protein Sequence:NP_035212.2Re-query CCDS DB by Nucleotide ID:NM_011082Re-query CCDS DB by Protein ID:NP_035212Link to BLAST:NP_035212.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035212.2 771 O70570 771 100% 0 0

Chromosomal Locations for CCDS 15260.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 130834429 130834471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 130841497 130841841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 130844435 130845088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 130846327 130846659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 130847213 130847545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 130848438 130848630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 130848991 130849118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 130849488 130849619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 130849731 130849789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 130850801 130850896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2316 nt):
ATGAGGCTCTACTTGTTCACGCTCTTGGTAACTGTCTTTTCAGGGGTCTCCACAAAAAGCCCCATATTTG
GTCCCCAGGAGGTGAGTAGTATAGAAGGCGACTCTGTTTCCATCACGTGCTACTACCCAGACACCTCTGT
CAACCGGCACACCCGGAAATACTGGTGCCGACAAGGAGCCAGCGGCATGTGCACAACGCTCATCTCTTCA
AATGGCTACCTCTCCAAGGAGTATTCAGGCAGAGCCAACCTCATCAACTTCCCAGAGAACAACACATTTG
TGATTAACATTGAGCAGCTCACCCAGGACGACACTGGGAGCTACAAGTGTGGCCTGGGTACCAGTAACCG
AGGCCTGTCCTTCGATGTCAGCCTGGAGGTCAGCCAGGTTCCTGAGTTGCCGAGTGACACCCACGTCTAC
ACAAAGGACATAGGCAGAAATGTGACCATTGAATGCCCTTTCAAAAGGGAGAATGCTCCCAGCAAGAAAT
CCCTGTGTAAGAAGACAAACCAGTCCTGCGAACTTGTCATTGACTCTACTGAGAAGGTGAACCCCAGCTA
TATAGGCAGAGCAAAACTTTTTATGAAAGGGACCGACCTAACTGTATTCTATGTCAACATTAGTCACCTA
ACGCACAATGATGCTGGGCTGTACATCTGCCAAGCTGGAGAAGGTCCTAGTGCTGATAAGAAGAATGTTG
ACCTCCAGGTGCTAGCGCCTGAGCCAGAGCTGCTTTATAAAGACCTGAGGTCCTCAGTGACTTTTGAATG
TGACCTGGGCCGTGAGGTGGCAAACGAGGCCAAATATCTGTGCCGGATGAATAAGGAAACCTGTGATGTG
ATCATTAACACCCTGGGGAAGAGGGATCCAGACTTTGAGGGCAGGATCCTGATAACCCCCAAGGATGACA
ATGGCCGCTTCAGTGTGTTGATCACAGGCCTGAGGAAGGAGGATGCAGGGCACTACCAGTGTGGAGCCCA
CAGTTCTGGTTTGCCTCAAGAAGGCTGGCCCATCCAGACTTGGCAACTCTTTGTCAATGAAGAGTCTACC
ATTCCCAATCGTCGCTCTGTTGTGAAGGGAGTCACAGGAGGCTCTGTGGCCATCGCCTGTCCCTATAACC
CCAAGGAAAGCAGCAGCCTCAAGTACTGGTGTCGCTGGGAAGGGGACGGAAATGGACATTGCCCCGTGCT
TGTGGGGACCCAGGCCCAGGTGCAAGAAGAGTATGAAGGCCGACTGGCACTGTTTGATCAGCCAGGCAAT
GGTACTTACACTGTCATCCTCAACCAGCTCACCACCGAGGATGCTGGCTTCTATTGGTGTCTTACCAATG
GTGACTCTCGCTGGAGAACCACAATAGAACTCCAGGTTGCCGAAGCTACAAGGGAGCCAAACCTTGAGGT
GACGCCACAGAACGCAACAGCAGTACTAGGAGAGACCTTCACCGTTTCCTGCCACTATCCGTGCAAATTC
TACTCCCAGGAGAAATACTGGTGCAAGTGGAGCAACAAGGGTTGCCACATCCTGCCAAGCCATGACGAAG
GTGCCCGCCAATCTTCTGTGAGCTGCGACCAGAGCAGCCAGCTGGTCTCCATGACCCTGAACCCGGTCAG
TAAGGAAGATGAAGGCTGGTACTGGTGTGGGGTAAAGCAAGGCCAGACCTATGGAGAAACTACCGCCATC
TATATAGCAGTTGAAGAGAGGACCAGAGGGTCATCCCATGTCAACCCAACAGATGCAAATGCACGTGCCA
AAGTCGCTCTGGAAGAAGAGGTAGTGGACTCCTCCATCAGTGAAAAAGAGAACAAAGCCATTCCAAATCC
CGGGCCTTTTGCCAACGAAAGAGAGATACAGAATGTGGGAGACCAAGCTCAGGAGAACAGAGCATCTGGG
GATGCTGGCAGTGCTGATGGACAAAGCAGGAGCTCCAGCTCCAAAGTGCTGTTCTCCACCCTGGTGCCCC
TGGGTCTGGTGCTGGCAGTGGGTGCTATAGCTGTGTGGGTGGCCAGAGTCCGACATCGGAAGAATGTAGA
CCGCATGTCAATCAGCAGCTACAGGACAGACATTAGCATGGCAGACTTCAAGAACTCCAGAGATTTGGGA
GGCAATGACAACATGGGGGCCTCTCCAGACACACAGCAAACAGTCATCGAAGGAAAAGATGAAATCGTGA
CTACCACGGAGTGCACCGCTGAGCCAGAAGAATCCAAGAAAGCAAAAAGGTCATCCAAGGAGGAAGCTGA
CATGGCCTACTCGGCATTCCTGCTTCAGTCCAGCACCATAGCTGCACAGGTCCACGATGGTCCCCAGGAA
GCCTAG

Translation (771 aa):
MRLYLFTLLVTVFSGVSTKSPIFGPQEVSSIEGDSVSITCYYPDTSVNRHTRKYWCRQGASGMCTTLISS
NGYLSKEYSGRANLINFPENNTFVINIEQLTQDDTGSYKCGLGTSNRGLSFDVSLEVSQVPELPSDTHVY
TKDIGRNVTIECPFKRENAPSKKSLCKKTNQSCELVIDSTEKVNPSYIGRAKLFMKGTDLTVFYVNISHL
THNDAGLYICQAGEGPSADKKNVDLQVLAPEPELLYKDLRSSVTFECDLGREVANEAKYLCRMNKETCDV
IINTLGKRDPDFEGRILITPKDDNGRFSVLITGLRKEDAGHYQCGAHSSGLPQEGWPIQTWQLFVNEEST
IPNRRSVVKGVTGGSVAIACPYNPKESSSLKYWCRWEGDGNGHCPVLVGTQAQVQEEYEGRLALFDQPGN
GTYTVILNQLTTEDAGFYWCLTNGDSRWRTTIELQVAEATREPNLEVTPQNATAVLGETFTVSCHYPCKF
YSQEKYWCKWSNKGCHILPSHDEGARQSSVSCDQSSQLVSMTLNPVSKEDEGWYWCGVKQGQTYGETTAI
YIAVEERTRGSSHVNPTDANARAKVALEEEVVDSSISEKENKAIPNPGPFANEREIQNVGDQAQENRASG
DAGSADGQSRSSSSKVLFSTLVPLGLVLAVGAIAVWVARVRHRKNVDRMSISSYRTDISMADFKNSRDLG
GNDNMGASPDTQQTVIEGKDEIVTTTECTAEPEESKKAKRSSKEEADMAYSAFLLQSSTIAAQVHDGPQE
A


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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