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Report for CCDS15255.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15255.1 Public Mus musculus 1 Thsd7b 23 108 98 CCDS HistoryNCBI Gene:210417Re-query CCDS DB by CCDS ID:15255.1Re-query CCDS DB by GeneID:210417See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15255.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000073527.12 ENSMUSP00000073220.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000073527.12Link to Ensembl Protein Viewer:ENSMUSP00000073220.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000073527Re-query CCDS DB by Protein ID:ENSMUSP00000073220
Original member Current member NCBI NM_172485.3 NP_766073.2 Accepted alive Link to Nucleotide Sequence:NM_172485.3Link to Protein Sequence:NP_766073.2Re-query CCDS DB by Nucleotide ID:NM_172485Re-query CCDS DB by Protein ID:NP_766073Link to BLAST:NP_766073.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766073.2 1607 Q6P4U0 1607 100% 0 0

Chromosomal Locations for CCDS 15255.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 129430831 129430969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 129595370 129596180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 129613110 129613358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 129628877 129629046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 129667814 129667969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 129678049 129678246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 129758446 129758637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 129760269 129760503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 129776293 129776408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 129816643 129816772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 129822592 129822695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 129915553 129915747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 129921248 129921514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 129951390 129951568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 130103071 130103204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 130116560 130116710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 130159574 130159715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 130162820 130162935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 130165049 130165166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 130180352 130180497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 130188460 130188619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 130189856 130190029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 130190131 130190226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 130192554 130192636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 130195107 130195299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 130210241 130210328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 130218099 130218180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4824 nt):
ATGTTTCTGAGGAGTGATCTGGCTGTCACTCACTGGGTTTCCAGGAGCATGAGGAAGCTCTTTCTAGTGC
TTTCTCTCCTGCTGTCCCAAGCAGCTCATTTGGAAGGCAGGAAGGACAATCAGTTCCTCTGGAAAACCGG
TCCCTGGGGAAGGTGTGCAGGTGACTGCGGACCAGGCGGAGCCCAAAGTCGTGCTGTATGGTGCTTTCAC
ATAGAAGGGTGGACGAGTCCCATGTCGAACTGTGATGAGAGCAGCCAACCTCCAAAGGAAAGGAGCTGTT
TCCGCGTGTGTGACTGGCACAGTGACCTGTTCCAGTGGGAGGTTTCCGACTGGCATCGCTGCCTTCTGGT
TCCTGGGGCCCAAGGTGAGCCCAGGCCTCGGGCTGTGGAATGTGTGACTGCACAGCACGGTCTACAGCAC
CGGACAGTGCGCTGTCTTCAGAAGCTCAATAGAACCATGGTGTCCAATGAGATCTGTGAACACTTTGCTC
CTCAGCCCCCCACAGAGCAAGCCTGCCTCATTCCTTGCCCCAGGGACTGCGTGGTATCTGAGTTCTCCCC
ATGGTCCACCTGCCCCGAAGGATGTGGGAAGAAACTGCAGCATAGAACTCGTGTGGCCATCGCGCCCCCT
CTGTATGGAGGTCTGCAGTGTCCAAATCTCACGGAGTCCAGAGCCTGCGAGGCTCCAGTTTCCTGTCCTC
TTGGGAAAGAAGAATATTCCTTCAGCCTAAAGGTGGGACCATGGAGCAAATGTAGACTCCCTCACCTTAA
GGAAGTCGACCTCAGCGGAAGAAATATCCAGGATTTTAGCTCTGATTCAAACGAGCAAGTCACCCTAACA
CATCAGAGTTACAAAGCACACCACCACTCCCAGCCTGGGGATGTAGTGATAGGGTTTCAAACCAGGCAGG
TGTGGTGTACCAGAAGTGATGGAAGAAACGCCCTGTTAAGCCTTTGTGTTCGTGATTCCTTCCCTCTGAC
TGTCCAGCCTTGTGTGATGCCAAAAGACTGTGAGACTTCTGAATGGTCTCCATGGAGCCCCTGTTCCAAG
ACCTGCCGTTCTGGGACTTTATCACCTGGAGTTAGAAGCAGGAGCCGGAACGTGAAGCATATTGCTATTG
GAGGTGGCCAGGAATGCCCAGAACTTCTTGAGAAAGAGACCTGCATTGCTGAAGGGGAATTTCTGCAACC
ATGTCCCAGGTATTCCTGGAGAACCTCTGAATGGAAGGAATGCCAAGTCTCTCTTCTTCTGGAGCAACAC
GATCCACTTTGGCATGAGACAGGACCAATCTGTGGTGGTGGGATCCAGACCCGGGAGGTGTACTGTGCCC
AGAGCCTACCAGCAACCATTGCATCAAGGACCAAGGAAGTCTCCAGGCCCGTGGAAAGGACACTATGCTT
GGGACCTGCCCCCTCAGCCTCTCAGCTTTGCAATGTCCCTTGCTCGATGGACTGCATAGTATCTTCCTGG
TCAACCTGGGGCCCATGTGTTTTTGAGAACTGCCATGATCCTCAGGGGAAGAAAGGCTTTAGAATGAGAC
AGCGCCATGTACTCATGGAGTCTACAGGGCCCATGGGGCGCTGCCCTCATCTGGCAGAATCTGTACCTTG
TGAGGATCCAATGTGTCATCGCTGGCTTGCCTCGGAAGGGATCTGTATTGCTGATCATGGGAAATGTGGC
CTGGGACATCGCATTCTGAAGGCTGTCTGTCAGAATGAGCGAGGAGAAGAAGTATCAGGGGGTCTCTGTC
CAGTGCCTCCTCCTCCTGAACGAATGGCTTGTGAAATTCCTTGCCGAATGGACTGTGTAGTGAGTGAGTG
GACAGTGTGGTCATCCTGCTCTCAGTCCTGTTCAAATAAAAACTCAGATGGGAAACAAACCAGGTCACGT
TCTATCCTCGCTTTGGCTGGAGAAGGTGGAAAGACCTGCCCTAGTAGTCAGGAACTCCAAGAGTACCGCC
TATGCAATGATCATTCCTGTACACAGCTCTACTGGGAGACATCTGCTTGGGGTTCCTGCTCTGAAAATAC
TCTTGTGACTGCTCTCAATGTGACCATTGGCTGGAATGGAGAAGCAACATGTGGGGTGGGCATTCAGACA
CGAAAGGTCTTCTGTATCAAGAGTCATGTGGGACAAGTAATGACCAAAAGATGTCCAGAGTCTACACGGC
CAGAAACTGTAAGACCTTGTTTCCTCCCATGCAAGAAAGACTGCCTTGTGACTGCTTTCAGTGAGTGGAC
ACCATGCCCACGGCCCTGCCAGCCAGGAAATACTACAATAAAACAATCTCGATACAGGATTATCATCCAG
GAAGCAGCCAATGGGGGTCAAGAGTGCCCAGACACCTTGTTTGAAGAAAGAGAGTGTGAAGATATCTCAC
TGTGTCCTTCATACCGGTGGAAGCCGCAGAAATGGAGCTCTTGTATCCTGGTTCCAGAGTCTATCAGGCA
GGGGAGAACAGGCACCAGTGAGGCATGTGGGAAGGGGCTGCAGACAAGAGCTGTCTCATGCATCTCTGAT
GATAACCAGTCTGCAGAAATGACAGAGTGCCTCAAGCAGATGAATGGCATGCCTCCCCTTGTGCAGGAAT
GCACCATTCCCTGTCGGGACGACTGCACCTTCACCCCTTGGTCTAAGTTCACTCCCTGCTCCAAGAACTG
TGAAGCAACTCAGATCAGGAGGCGGCAGCTAACAGGGAAAAGCAGGAAGAAAGAGAAGTGCCAGGATGCG
TCCCTGTACCCTCTGGTGGAAATGGAACCATGTCCCTGTGATACGTTTATGTCTCATCCTTATGGAAACT
GGTCAGCTTGCATTCTACCAGAAGGCAAAAGGGATGCTCAGCAAGGAGGATTGTGGGTGCAAGGAGATGA
CAAAGAATGTGGAGAAGGCGTGCGCTTTCGAGCAATAGCATGCTCCAATATAAATGGAAGACCGGTTGAC
CCCTCATTCTGCAACAGCTCTGGTTACATTCAGGAAGCATGTGTCATCCCCTGTCCGTTTGATTGCAAGC
TAAGTGACTGGTCCAGCTGGGGTTCTTGCAGCTCATCTTGTGGGATTGGAGTGAGAATTCGATCAAAATG
GCTAAAAGAAAAACCTTACAGTGGAGGTCGGCCATGTCCCAAACTGGATCTCAAGAATCAGGTTCATGAG
GCAGTCCCATGTTACAGTGAGTGTGATCAATATTCCTGGGTCGTAGAACACTGGTCTCCATGCAAGATCA
ATAATGAGCTGAGATCCCCACGCTGTGGAAGAGGAACACAGTCTAGAAGAATCAGGTGTGTGAGTACTGC
TGACAGAGAAGGAGGGGCAGTGAACAGGAGCCTGTGCAACCAGGATGATGCTCCCCAAGAAACCCAGGCC
TGTTCTCTTCTGTGTCCCAGTGAGTGTGTCATGTCCGAGTGGGGAACATGGAGCAGATGCCCACAGTCAT
GTGACCCCCATGCAATGCAGAGAAGAACTCGGCATCTGCTGAGGCCCTCACTGAACTCAAGAACTTGTGG
GGAAGACTCGCAGGTGCGGCCCTGCCTCCTCAATGAAAACTGTTTCCAGTTCCAGTACAATCTGACAGAG
TGGAGCACATGCCAGCTGAGTGAAAATGTTTCCTGTGGCCAGGGTGTGAGGACCCGCCTGCTGAGCTGTG
TGCGCAGTGATGGCAAGTCTGTCAGCATGGACCACTGCGAGCAGCGTAATCTGGAAAAACCCCAGAGGAT
GAGTATTCCCTGTCTGGTGGAATGTGTGGTCAACTGTCAGCTCTCAGGATGGACAACATGGACAGAGTGT
TCACAAACCTGTGGCCAAGGAGGTCGCATGAGCCGGACTCGATTTATCATTATGCCAACCCAAGGAGAAG
GTCGACAATGCCCCACAGAACTCACCCAGCAGAAACCCTGCCCAGTGACACCCTGCTATAGTTGGGTCCT
TGGCAACTGGTCTGCATGTAAATTGGAGGGCGGAGATTGTGGAGAAGGAGTCCAGGTGCGCAGCTTCTCC
TGTGTAGTCCACAATGGCTCAATATCCCACACGGCTGTCCCTGTGGAGGAGGCCCTGTGTGGAGAAGTAC
CCTTCCAAGAAGGAATCCTGAAGCAGCTGTGCTCTGTGCCTTGCCCAGGAGACTGCCACATTACCCCATG
GTCTGAGTGGAGCAAGTGTGAGCTAACCTGCATTGACGGAAGAAGCTTCGAGACCACAGGCCGCCAATCT
AGGTCAAGGACATTCATAATCCAGTCTTTTGAGAATCAAGATAGCTGCCCCCAACAGGTTCTAGAAACAC
GACCATGTACAGGTGGCAAATGTTATCACTACATATGGAAAGCAAGTCTTTGGAACAATAATGAGCGGAC
TGTGTGGTGCCAGCGCTCAGATGGCCTTAATGTCACAGGTGGCTGCTCCCCTCAGGCACGCCCTGCTGCT
ATTCGGCAATGCATTCCAGCATGCAAAAAACCTTTCTCCTACTGCACACAGGGAGGAGTCTGTGGCTGTG
AGAAGGGATACACAGAGATAATGAGATCAAGTGGCTTCCTGGATTACTGCATGAAGGTGCCTGGCTCGGA
GGATAAAAAAGCTGACGTGAAAAACCTCTCTGGGAAAAATAGACCTGTGAATTCCAAAATACATGATATT
TTTAAAGGATGGTCTCTCCAACCTCTGGACCCAGATGGCCGAGTAAAAATGTGGGTTTATGGCGTTTCCG
GTGGCAGTTTTCTTATCATGATCTTCCTAGTATTTACTTCCTATCTTGTTTGCAAGAAGCCAAAACCACA
TCAAAGCACACCTCGCCATCAGAAGCCACTGACCTTGGCCTACGATGGAGACTTGGACATGTAA

Translation (1607 aa):
MFLRSDLAVTHWVSRSMRKLFLVLSLLLSQAAHLEGRKDNQFLWKTGPWGRCAGDCGPGGAQSRAVWCFH
IEGWTSPMSNCDESSQPPKERSCFRVCDWHSDLFQWEVSDWHRCLLVPGAQGEPRPRAVECVTAQHGLQH
RTVRCLQKLNRTMVSNEICEHFAPQPPTEQACLIPCPRDCVVSEFSPWSTCPEGCGKKLQHRTRVAIAPP
LYGGLQCPNLTESRACEAPVSCPLGKEEYSFSLKVGPWSKCRLPHLKEVDLSGRNIQDFSSDSNEQVTLT
HQSYKAHHHSQPGDVVIGFQTRQVWCTRSDGRNALLSLCVRDSFPLTVQPCVMPKDCETSEWSPWSPCSK
TCRSGTLSPGVRSRSRNVKHIAIGGGQECPELLEKETCIAEGEFLQPCPRYSWRTSEWKECQVSLLLEQH
DPLWHETGPICGGGIQTREVYCAQSLPATIASRTKEVSRPVERTLCLGPAPSASQLCNVPCSMDCIVSSW
STWGPCVFENCHDPQGKKGFRMRQRHVLMESTGPMGRCPHLAESVPCEDPMCHRWLASEGICIADHGKCG
LGHRILKAVCQNERGEEVSGGLCPVPPPPERMACEIPCRMDCVVSEWTVWSSCSQSCSNKNSDGKQTRSR
SILALAGEGGKTCPSSQELQEYRLCNDHSCTQLYWETSAWGSCSENTLVTALNVTIGWNGEATCGVGIQT
RKVFCIKSHVGQVMTKRCPESTRPETVRPCFLPCKKDCLVTAFSEWTPCPRPCQPGNTTIKQSRYRIIIQ
EAANGGQECPDTLFEERECEDISLCPSYRWKPQKWSSCILVPESIRQGRTGTSEACGKGLQTRAVSCISD
DNQSAEMTECLKQMNGMPPLVQECTIPCRDDCTFTPWSKFTPCSKNCEATQIRRRQLTGKSRKKEKCQDA
SLYPLVEMEPCPCDTFMSHPYGNWSACILPEGKRDAQQGGLWVQGDDKECGEGVRFRAIACSNINGRPVD
PSFCNSSGYIQEACVIPCPFDCKLSDWSSWGSCSSSCGIGVRIRSKWLKEKPYSGGRPCPKLDLKNQVHE
AVPCYSECDQYSWVVEHWSPCKINNELRSPRCGRGTQSRRIRCVSTADREGGAVNRSLCNQDDAPQETQA
CSLLCPSECVMSEWGTWSRCPQSCDPHAMQRRTRHLLRPSLNSRTCGEDSQVRPCLLNENCFQFQYNLTE
WSTCQLSENVSCGQGVRTRLLSCVRSDGKSVSMDHCEQRNLEKPQRMSIPCLVECVVNCQLSGWTTWTEC
SQTCGQGGRMSRTRFIIMPTQGEGRQCPTELTQQKPCPVTPCYSWVLGNWSACKLEGGDCGEGVQVRSFS
CVVHNGSISHTAVPVEEALCGEVPFQEGILKQLCSVPCPGDCHITPWSEWSKCELTCIDGRSFETTGRQS
RSRTFIIQSFENQDSCPQQVLETRPCTGGKCYHYIWKASLWNNNERTVWCQRSDGLNVTGGCSPQARPAA
IRQCIPACKKPFSYCTQGGVCGCEKGYTEIMRSSGFLDYCMKVPGSEDKKADVKNLSGKNRPVNSKIHDI
FKGWSLQPLDPDGRVKMWVYGVSGGSFLIMIFLVFTSYLVCKKPKPHQSTPRHQKPLTLAYDGDLDM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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