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Report for CCDS15248.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15248.1 Public Mus musculus 1 Ccnt2 23 108 98 CCDS HistoryNCBI Gene:72949Re-query CCDS DB by CCDS ID:15248.1Re-query CCDS DB by GeneID:72949See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15248.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027587.14 ENSMUSP00000027587.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027587.14Link to Ensembl Protein Viewer:ENSMUSP00000027587.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000027587Re-query CCDS DB by Protein ID:ENSMUSP00000027587
Original member Current member NCBI NM_028399.1 NP_082675.1 Accepted alive Link to Nucleotide Sequence:NM_028399.1Link to Protein Sequence:NP_082675.1Re-query CCDS DB by Nucleotide ID:NM_028399Re-query CCDS DB by Protein ID:NP_082675Link to BLAST:NP_082675.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082675.1 723 Q7TQK0-1 723 100% 0 0

Chromosomal Locations for CCDS 15248.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 127774228 127774385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 127775101 127775182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 127791605 127791733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 127793358 127793418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 127795255 127795317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 127797841 127797886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 127799390 127799553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 127801606 127801676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 127802162 127803559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2172 nt):
ATGGCGTCGGGCCGTGGAGCTTCTTCTCGCTGGTTCTTTACTCGGGAACAGCTGGAGAACACGCCGAGCC
GCCGCTGCGGAGTGGAAGCGGATGAAGAGCTGTCGCATCGCCAGCAGGCGGCCAACCTCATCCAGGACAT
GGGGCAACGTCTCAATGTCTCTCAGCTTACAATAAACACTGCGATTGTTTATATGCACAGGTTTTATATG
CACCATTCCTTCACCAAATTCAACAGAAATATAATATCACCTACTGCATTGTTTTTGGCTGCAAAAGTGG
AAGAGCAGGCTCGAAAGCTTGAACATGTTATCAAAGTAGCACACGCTTGTCTTCATCCCCTAGAGCCACT
CCTGGACACAAAATGTGATGCTTATCTTCAGCAGACTCAAGAACTGGTTTTACTTGAAACCATAATGCTA
CAAACACTGGGTTTTGAGATCACCATTGAACACCCACACACAGATGTGGTGAAATGCACCCAGTTAGTAA
GAGCAAGCAAGGATTTGGCACAGACATCCTATTTCATGGCTACCAACAGTTTGCATCTTACGACCTTCTG
TCTTCAGTACAAACCCACAGTGATAGCATGTGTATGCATTCATTTGGCTTGCAAATGGTCCAATTGGGAG
ATTCCTGTGTCAACAGATGGAAAGCACTGGTGGGAGTATGTGGACCCCACGGTTACCCTAGAGCTGCTAG
ATGAACTAACACATGAGTTTCTACAAATATTGGAGAAAACGCCTAGTAGGTTGAAGAGGATTCGAAACTG
GAGGGCTATGGCTAAGAAACCAAAAGTAGATGGACAAGTATCAGAGACACCACTGCTTGGTTCATCTTTG
GTCCAGAATTCTATTTTAGTAGATAGTGTCACTGGTGTACCTGCCAACCCAAGCTTTCAGAAACCATCAA
CATCAACGTTCCCTGCTCCAATACCTCTAAATTCAGGAAGTACTTCTGTTCAAGATAGCCGTGCATCTGA
TAATTTATCAGTGCTAGCAGCAGGAATGCCCAGTACCTCATACAGTTTGTCATCACACCAAGAGTGGCCC
CAGCATCCAGATTCAGCCAGGACAGACCCAGTGTACACACAGAAACAGGAGGCCACTCTCTCTGGGAGCC
AGTACATAAGCTTCCAGCAGGGACCTTCAATGGCACTGCATTCTGGATTACATCACAGGCCGGACAAAGT
TGCTGATCATTCATCAGCTAAGCAAGAATATACTCACAAAGCTGGGAGCAGTAAACACCATGGTCCCATA
CCTGCTACTCCTGGAATGCTTCCTCAGAAAATGTCTTTAGATAAGTACAGAGAGAAGCGGAAGCTGGAAA
CCCTTGACGTGGACACAAGGGATCACTATCTAGCTGCCCATGCAGAACAGCAGCACAAGCATGGGCCGGC
TCAGGCAGTCACGGGCACTTCTGTCACTTCTCCCATCAAGATGAAGCTCCCCCTCACCAACTCGGACAGG
CCTGAGAAACACGTGGCAGAGAAAAAGGAGAGGAGTGGATCACTGAAGCTCCGCATTCCCATCCCCCCGC
CTGACAAAGGTCCCAGCAAAGAGGAGCTGAAGATGAAAATCAAAGTGGCATCCTCGGAAAGACACAGCTC
TTCTGATGAAGGCAGTGGGAAGAGCAAGCACTCAAGCCCACACATCAGCAGAGACCACAAGGAGAAGCAC
AAGGAGCACCCTGCCAACCGCCACCACAGCAGCCACAAGTATTTGCACATGCACAGTGGAGGCAGTAAGC
ACACAGCGGATGGAATGCCTCCCACGGTGCTCAGGAGTCCTGTGGGCCTGGGCCCTGAAGGCGTCTCCTC
CGCCTCCAGTGCAAGGAAGAAGCTGCATAGCAGCGAAGCCTCCCACAACCACCACTCCAAAATGAGCAAA
AGTTCCAAAAGTGCAGGTAGTTCATCTAGTTCTTCCTCTGTTAAGCAGTATCTATCCTCTCACAGCTCTG
TTTTTAACCATCCCTTACCCCCTCCTCCCCCTGTCACATACCAGGTGGGCTACGGACATCTCAGCACCCT
CGTGAAACTGGACAAGAAACCAGTGGAGCCCCACGGTCCTGAGGCCAATCACGAGTACAGTACAAGCAGC
CAGCATATGGACTACAAAGACACATTCGACATGCTGGACTCGCTGCTAAGTGCCCAAGGAATGAATATGT
AA

Translation (723 aa):
MASGRGASSRWFFTREQLENTPSRRCGVEADEELSHRQQAANLIQDMGQRLNVSQLTINTAIVYMHRFYM
HHSFTKFNRNIISPTALFLAAKVEEQARKLEHVIKVAHACLHPLEPLLDTKCDAYLQQTQELVLLETIML
QTLGFEITIEHPHTDVVKCTQLVRASKDLAQTSYFMATNSLHLTTFCLQYKPTVIACVCIHLACKWSNWE
IPVSTDGKHWWEYVDPTVTLELLDELTHEFLQILEKTPSRLKRIRNWRAMAKKPKVDGQVSETPLLGSSL
VQNSILVDSVTGVPANPSFQKPSTSTFPAPIPLNSGSTSVQDSRASDNLSVLAAGMPSTSYSLSSHQEWP
QHPDSARTDPVYTQKQEATLSGSQYISFQQGPSMALHSGLHHRPDKVADHSSAKQEYTHKAGSSKHHGPI
PATPGMLPQKMSLDKYREKRKLETLDVDTRDHYLAAHAEQQHKHGPAQAVTGTSVTSPIKMKLPLTNSDR
PEKHVAEKKERSGSLKLRIPIPPPDKGPSKEELKMKIKVASSERHSSSDEGSGKSKHSSPHISRDHKEKH
KEHPANRHHSSHKYLHMHSGGSKHTADGMPPTVLRSPVGLGPEGVSSASSARKKLHSSEASHNHHSKMSK
SSKSAGSSSSSSSVKQYLSSHSSVFNHPLPPPPPVTYQVGYGHLSTLVKLDKKPVEPHGPEANHEYSTSS
QHMDYKDTFDMLDSLLSAQGMNM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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