NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS15160.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15160.1 Public Mus musculus 1 Espnl 23 108 98 CCDS HistoryNCBI Gene:227357Re-query CCDS DB by CCDS ID:15160.1Re-query CCDS DB by GeneID:227357See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15160.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000088904.9 ENSMUSP00000086294.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000088904.9Link to Ensembl Protein Viewer:ENSMUSP00000086294.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000088904Re-query CCDS DB by Protein ID:ENSMUSP00000086294
Original member NCBI NM_001033292.3 NP_001028464.1 Updated not alive Link to Nucleotide Sequence:NM_001033292.3Link to Protein Sequence:NP_001028464.1Re-query CCDS DB by Nucleotide ID:NM_001033292Re-query CCDS DB by Protein ID:NP_001028464
Current member NCBI NM_001033292.4 NP_001028464.1 Accepted alive Link to Nucleotide Sequence:NM_001033292.4Link to Protein Sequence:NP_001028464.1Re-query CCDS DB by Nucleotide ID:NM_001033292Re-query CCDS DB by Protein ID:NP_001028464Link to BLAST:NP_001028464.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028464.1 1005 Q3UYR4 1005 100% 0 0

Chromosomal Locations for CCDS 15160.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 91322133 91322426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 91323479 91323669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 91325036 91325222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 91327476 91327658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 91334690 91334821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 91340509 91340623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 91341846 91341943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 91342541 91342735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 91344315 91345937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3018 nt):
ATGGAGGCGCAGCAGGCACTGGTGGCCTCCAAGGATGGGGATATGGCCACCTTGGAACGGCTATTTGAGG
CTGGTGCCCTAAGACCAGACATCACTGATGATCTGGGGGCTGGCCTGGTGCATCATGCCACCCGGGCTGG
TCACCTGGACTGTGTCAAGTTCCTGGTACAGAGAGCCAAGCTGCCAGGCAACCAGCAGGCACACAACGGG
GCCACACCAGTGCACGATGCAGCAGCCACGGGCAACCTGGCAGAGCTGTGCTGGCTGGTCCGTGATGCGG
GCTGCGGGCTGCAGGACCAAGATGCCTCAGGTGTCTCTCCGCTGCACCTGGCTGCCCGGTTTGGACACCC
AGCCCTGGTGGAGTGGTTACTCCGTGAGGGCCATGCAGCCACACTGGAGACGCTGGAAGGGGCCTTACCA
CTGCACCACGCTGCTGTAAGTGGTGATCTGACCTGTCTGAAACTCCTGACAGCGGCCCACAGCAGTGGTG
TGAACCAGCGGACATGCAGTGGTGCCTCTCCACTCTACCTGGCCTGCCAAGAGGGCCACCTGCATCTGGC
ACAGTTCCTGGTGAAAGACTGCGGGGCCGACGTGCGCCTGAGAGCCCTGGATGGCATGAGCTCATTGCAC
GCTGCGGCTGCCCACGGCCACTACTCTCTAGTTGTCTGGCTGGTGACATTCACAGACATCGGCCTGACAG
CACGGGATAATGAAGGAGCCACTGCCCTGCACTTTGCAGCTCGGGGGGGCCACACACCTATTCTCGACCG
GCTCCTGCTCATGGGTGCCCCCATCATGAGAGACTCTTGGGGAGGGACTCCCCTGCATGATGCAGCCGAG
AATGGACACATGGAGTGCTGCCAGACTCTGCTCTCCCACCACGTAGACCCCTTCCTGCGGGATGAAGATG
GGTATACAGCGATAGACCTGGCAGAGTACCATGGACACCAGGATTGTGCCCAGTTCCTGCGGGAAATGTC
TCGGCCGGTGCGGGTCCTGATGACACCCCCACCCCCACCATTTCCACCTCCTCCACTGCTGGCTGCAAAA
CTCTCCCTGGAAGAGGAAAGAAGAGGGGACTCGGGACTCAAAAGCCCCTCATCTGCAACTCTCAGCCCAG
TCTGGCCTGCTCAGCCTGTCCCAAGGGAACCGATGGCCTGCACGGCCCCTCTGAGGGTCACCACCCCAGA
TGCTCTTCAGGGGCCTGAGGTGGAAGCCCGGGACTCCCGTGCTGGCCTAGCCACTCTGCAGCTGGATGGC
TTGCCTGCGGGAGATCTTGACATGCTGGTGCCCACACAGGACGAGCGTGGCCGGCCCATCCCTGAGTGGA
AGCGGCAGGTGATGGTGCGGAAGCTACAGGCTCGCCTGGGTGCAGACCATCCTCCAGAAGACCAGGACCA
GAGTCAGAGGCAGGACTCAGGGCCCACCGCTGCAGAACAGGCAACTTGGAGATATTCACAGACGCACCAG
GCCATCCTGGGCCCCTTTGGAGAGCTGCTGACGGAGGATGATCTTGTATACCTGGAGAAGCAGATCAACG
ACCTGCAGCTCCGGCGACGCTGCCAGGAGTATGAGAGTGAGTTGGGCCGGCTGGCAGCCCAGCTGCAGGC
CCTCCTGCCCGAGCCCCTGGTCAGCATCACCGTCAACAGCCACTTTCTGCCCCGGGCTCCCGGCCTGGAA
GACGAGGAAGCTCCAGTCCTGGCGACTGAACTCGAAGCCTCCGAGGAGCCGGGGAAGGCCGAGCCCAGAG
GGCAGCCGCTGCCCTTCTGGTGCAGCCACATCGGTCGCCTGGTGCGCAGCATGTCCCTGCTGCTGAAGGG
TATGAACGGGCTGGCACAGGGTGAGGAGAAACCACCCTCACCGGTCCCGCAGGACCTAGGCAAGGAGACC
ATTGCCGGCCCCTCCCGGAGCGAGGCCCAGCGCGAGATCCAAGAGTGCGGAGTGTCAGTTCGGACATTGC
GGGGGAACTTCGAGTTTGCCCCTGATCTGCCCTGCGCCTTGAACTCGGGTCCCTGTGAGCTGGGGGTGCG
GCCTGGCCAGTGTCTGAGAGGTTGCTGGTCGGCGCCGCCACAGCCCCGAGGCGACGCGATGGGTGGGGAG
CCCGGGCCAGGCGACACAGAGGAGGCCAGCGACTCGGGCATCAGCTGCGAAGAGGCCCCGTCAGAGGCCG
GCGCGGGTCCAGGGCTGGACCTGGCCAGCTTGCGCAAGGAGCGCATCGTCATGCTCTTCCTCGGCCATTG
GAAGAAGTCAGCCTACACGCCCGCGCTCCGGACGGCAGCCTGCAGGACCCTGGAGGCTCAGCGTGCACGA
TCCAGGGGCCCAGAGGCCGCGGGTAGCCCCCGGCCGTCCTCCCCGCAGCCCAGCGATGGCCCTCGGCTTG
GCCACCTGTGGCAGCAGCGTGGCATCATCACCCACCTGCTGGGCACCTGGAAAGCCATCATGGCGCACGT
GCCCGCCCGGCAGCTGCGGAGGCTGAGCCGCAGGGAGCGTGGGCCCCTGTCTCCGGAGCAGTTCTTGCCG
CACGTGGACGGGGCCCCCGTGCCCTACAACAGCCTCTCGCTGGACCTCTTCATGCTTGGCTACTTCCAGC
TCCTGGAGTGCGACCTGCCAGCCGAGGAGCGCAAGATGCGCCACCTGCTGTGCTTCGAGGTTTTCGAGCA
TCTGGGCGCACACGGCTGGGAGGCTGTGCGAGCCTTCCATAAGGCAGTGACCGACGAGGTGGCCGCGGGT
CGCCGCGCCTGGACCGACGGCTTTGAGGACATCAAAGCCCGCTTCTTCGGCTCCAGCCAGGGTCCCCCCT
GGGACGTGGAGCCAGGTCGCAAGCTGGGCCTGACACCACTCGGGTCCTTGCCCCATGCTTCCCTTCCTGG
CAGCGGCCCTGAACCTGCGGTGCCGCCGAGGCTGGGGTCTGATTCCCAGGGGAGCAGCTTCAACAGCGGA
GACATCTGTGGCTACATCGACCGCAGCTTCGCATTCTGGAAGGAGAAAGAGGCTGAGATGTTTAACTTTG
GAGAATGA

Translation (1005 aa):
MEAQQALVASKDGDMATLERLFEAGALRPDITDDLGAGLVHHATRAGHLDCVKFLVQRAKLPGNQQAHNG
ATPVHDAAATGNLAELCWLVRDAGCGLQDQDASGVSPLHLAARFGHPALVEWLLREGHAATLETLEGALP
LHHAAVSGDLTCLKLLTAAHSSGVNQRTCSGASPLYLACQEGHLHLAQFLVKDCGADVRLRALDGMSSLH
AAAAHGHYSLVVWLVTFTDIGLTARDNEGATALHFAARGGHTPILDRLLLMGAPIMRDSWGGTPLHDAAE
NGHMECCQTLLSHHVDPFLRDEDGYTAIDLAEYHGHQDCAQFLREMSRPVRVLMTPPPPPFPPPPLLAAK
LSLEEERRGDSGLKSPSSATLSPVWPAQPVPREPMACTAPLRVTTPDALQGPEVEARDSRAGLATLQLDG
LPAGDLDMLVPTQDERGRPIPEWKRQVMVRKLQARLGADHPPEDQDQSQRQDSGPTAAEQATWRYSQTHQ
AILGPFGELLTEDDLVYLEKQINDLQLRRRCQEYESELGRLAAQLQALLPEPLVSITVNSHFLPRAPGLE
DEEAPVLATELEASEEPGKAEPRGQPLPFWCSHIGRLVRSMSLLLKGMNGLAQGEEKPPSPVPQDLGKET
IAGPSRSEAQREIQECGVSVRTLRGNFEFAPDLPCALNSGPCELGVRPGQCLRGCWSAPPQPRGDAMGGE
PGPGDTEEASDSGISCEEAPSEAGAGPGLDLASLRKERIVMLFLGHWKKSAYTPALRTAACRTLEAQRAR
SRGPEAAGSPRPSSPQPSDGPRLGHLWQQRGIITHLLGTWKAIMAHVPARQLRRLSRRERGPLSPEQFLP
HVDGAPVPYNSLSLDLFMLGYFQLLECDLPAEERKMRHLLCFEVFEHLGAHGWEAVRAFHKAVTDEVAAG
RRAWTDGFEDIKARFFGSSQGPPWDVEPGRKLGLTPLGSLPHASLPGSGPEPAVPPRLGSDSQGSSFNSG
DICGYIDRSFAFWKEKEAEMFNFGE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH