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Report for CCDS15104.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15104.2 Public Mus musculus 1 Pid1 23 108 98 CCDS HistoryNCBI Gene:98496Re-query CCDS DB by CCDS ID:15104.2Re-query CCDS DB by GeneID:98496See the combined annotation on chromosome 1 in Sequence Viewer

Public Note for CCDS 15104.2
The coding region has been updated to extend the N-terminus to one that is supported by available conservation data. The use of an alternative upstream start codon would result in a protein that is 14 aa longer.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 15104.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000168574.8 ENSMUSP00000127716.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000168574.8Link to Ensembl Protein Viewer:ENSMUSP00000127716.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000168574Re-query CCDS DB by Protein ID:ENSMUSP00000127716
Original member Current member NCBI NM_001003948.2 NP_001003948.2 Accepted alive Link to Nucleotide Sequence:NM_001003948.2Link to Protein Sequence:NP_001003948.2Re-query CCDS DB by Nucleotide ID:NM_001003948Re-query CCDS DB by Protein ID:NP_001003948Link to BLAST:NP_001003948.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001003948.2 217 Q3UBG2-1 217 100% 0 0

Chromosomal Locations for CCDS 15104.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 84038031 84038507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 84159232 84159378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 84284341 84284370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (654 nt):
ATGTGGCAGCCGGCTACTGAGCGCCTGCAGCACTTCCAGACCATGCTGAAGTCTAAGTTGAATGTCCTAA
CACTGAAAAAGGAACCTATACCAGCAGTCCTCTTCCATGAGCCGGAAGCCATTGAGCTGTGCACCACCAC
ACCCCTGATGAAGGCAAGGACTCATAGTGGCTGCAAGGTTACCTATCTGGGAAAAGTCTCTACCACAGGC
ATGCAGTTTTTGTCTGGTTGCACCGAGAAGCCAGTCATTGAGCTCTGGAAGAAACACACACTGGCTCGAG
AAGATGTTTTCCCGGCCAACGCCCTCCTAGAGATCCGGCCATTCCAAGTGTGGCTTCATCACCTTGACCA
CAAGGGTGAGGCAACAGTGCACATGGATACCTTCCAGGTGGCTCGAATTGCCTACTGCACAGCTGACCAC
AACGTGAGCCCCAACATCTTCGCCTGGGTGTACAGAGAGATCAATGATGACCTCTCTTACCAGATGGACT
GCCATGCAGTGCAATGTGAGAGCAAGCTGGAGGCCAAGAAGCTGGCACACGCCATGATGGAGGCATTCAA
GAAGACTTTCCACAGTATGAAGAGTGATGGGCGGATCCATAGGAGCAGCTCATCTGAAGAGGCTTCCCAG
GAATTGGAATCTGATGATGGCTGA

Translation (217 aa):
MWQPATERLQHFQTMLKSKLNVLTLKKEPIPAVLFHEPEAIELCTTTPLMKARTHSGCKVTYLGKVSTTG
MQFLSGCTEKPVIELWKKHTLAREDVFPANALLEIRPFQVWLHHLDHKGEATVHMDTFQVARIAYCTADH
NVSPNIFAWVYREINDDLSYQMDCHAVQCESKLEAKKLAHAMMEAFKKTFHSMKSDGRIHRSSSSEEASQ
ELESDDG


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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