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Report for CCDS15080.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15080.1 Public Mus musculus 1 Slc4a3 23 108 98 CCDS HistoryNCBI Gene:20536Re-query CCDS DB by CCDS ID:15080.1Re-query CCDS DB by GeneID:20536See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15080.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000124341.7 ENSMUSP00000116747.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000124341.7Link to Ensembl Protein Viewer:ENSMUSP00000116747.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000124341Re-query CCDS DB by Protein ID:ENSMUSP00000116747
Original member Current member NCBI NM_001357149.1 NP_001344078.1 Accepted alive Link to Nucleotide Sequence:NM_001357149.1Link to Protein Sequence:NP_001344078.1Re-query CCDS DB by Nucleotide ID:NM_001357149Re-query CCDS DB by Protein ID:NP_001344078Link to BLAST:NP_001344078.1
Original member Current member NCBI NM_001357150.1 NP_001344079.1 Accepted alive Link to Nucleotide Sequence:NM_001357150.1Link to Protein Sequence:NP_001344079.1Re-query CCDS DB by Nucleotide ID:NM_001357150Re-query CCDS DB by Protein ID:NP_001344079Link to BLAST:NP_001344079.1
Original member Current member NCBI NM_009208.3 NP_033234.2 Accepted alive Link to Nucleotide Sequence:NM_009208.3Link to Protein Sequence:NP_033234.2Re-query CCDS DB by Nucleotide ID:NM_009208Re-query CCDS DB by Protein ID:NP_033234Link to BLAST:NP_033234.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001344078.1 1227 P16283-1 1227 100% 0 0
NP_001344079.1 1227 P16283-1 1227 100% 0 0
NP_033234.2 1227 P16283-1 1227 100% 0 0

Chromosomal Locations for CCDS 15080.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 75546871 75546921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75547233 75547398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75547944 75548221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75548316 75548431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75548869 75549065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75550504 75550652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75550755 75550935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75551247 75551382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75551637 75551820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75552153 75552252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75552623 75552807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75553256 75553481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75553624 75553842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75554160 75554308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75554502 75554696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75554923 75555141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75555411 75555500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75555939 75556105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75556744 75556997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75557273 75557442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75557627 75557800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75558813 75558890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3684 nt):
ATGGCTAATGGGGTGATCCCGCCGCCCGGGGGCGCCTCCCCCCTACCCCAGGTCCGGGTGCCCTTGGAGG
AGCCCCCTCTGGGTCCAGATGTAGAAGAGGAAGATGATGACTTGGGCAAGACCTTGGCTGTGAGCAGGTT
TGGGGACCTCATCAGCAAGACCCCGGCCTGGGACCCCGAGAAGCCTAGCCGCAGCTACAGCGAGCGGGAC
TTTGAGTTTCACCGGCACACATCCCACCACACCCATCACCCGCTCTCAGCCCGCCTGCCTCCACCCCACA
AGCTTCGGCGACCGCCCCCCACCTCTGCTCGGCACACCAGGAGGAAGAGGAAGAAAGAGAAAACCTCTGC
TCCCCCATCAGAAGGGACACCCCCTATCCAGGAGGAGGGGGGAGCTGGAGCAGAAGAGGAGGAGGAGGAA
GAAGAGGAAGAAGAGGGAGAGTCTGAGGCAGAGCCTGTGGAGCCTCTACCCCCAGGTCCCCCACAGAAAG
CAAAGTTCTCCATTGGAAGTGATGAAGATGACAGCCCAGGCCTTCCTGTCAAGGCTCCCTGTGCCAAGGC
CTTGCCTTCTGTGGGCCTGCAGTCTGACCAGAGCCCCCAGCGCTCCGGCAGCTCCCCCAGTCCCCGGGCC
CGGGCTTCCCGAATCTCCACAGAGAAGAGCCGGCCCTGGAGTCCATCAGCCAGCTATGACCTGCGGGAGC
GATTGTGCCCAGGCAGTGCCCTGGGCAACCCTGGGCCAGAGCAGCGGGTGCCCACTGACGAGGCGGAGGC
TCAAATGTTGGGTTCTGCCGATCTGGACGACATGAAGAGTCATCGGCTGGAGGATAACCCCGGGGTGCGG
CGACACTTGGTGAAGAAACCATCCCGGATACAGGGTGGGAGAGGCAGCCCCAGTGGCCTGGCGCCCATCT
TGCGCAGGAAAAAGAAGAAGAAGAAGCTGGATCGGAGGCCTCATGAGGTGTTCGTGGAGCTGAATGAGCT
GATGTTGGACCGGAGCCAGGAGCCACACTGGCGGGAGACAGCACGCTGGATCAAGTTCGAGGAGGATGTG
GAGGAGGAGACGGAGCGCTGGGGGAAGCCTCACGTTGCTTCGCTCTCCTTCCGTAGCCTGCTGGAACTTA
GGAGGACCATTGCCCAGGGAGCGGCTCTCCTGGACCTGGAACAGACCACCCTGCCGGGTATCGCTCACCT
TGTGGTGGAGACCATGATTGTATCTGACCAGATCCGGCCTGAGGACAGGGCTAGTGTTCTGAGGACTCTA
CTCCTGAAACACAGCCATCCCAACGATGACAAGGACAGTGGCTTTTTCCCCCGAAATCCGTCAAGCTCCA
GTGTGAACTCAGTCTTGGGGAATCACCACCCAACTCCTAGTCATGGCCCTGATGGTGCGGTCCCCACCAT
GGCTGATGACCAAGGAGAGCCAGCCCCGTTGTGGCCACATGACCCTGATGCTAAGGAGAAGCCCCTCCAC
ATGCCTGGGGGAGACGGTCACCGAGGGAAAAGCCTGAAACTGCTGGAGAAGATCCCGGAGGACGCCGAGG
CCACTGTCGTGCTTGTGGGCTGCGTGCCTTTCTTGGAGCAGCCGGCGGCAGCTTTTGTGCGGCTCAGCGA
GGCTGTTCTCTTGGAGTCTGTGCTGGAGGTCCCCGTGCCTGTTCGCTTCCTCTTTGTGATGCTGGGGCCC
AGCCATACCAGCACTGACTATCACGAATTAGGGCGCTCCATTGCCACACTCATGTCTGACAAGCTCTTTC
ACGAGGCTGCCTATCAGGCAGATGACCGGCAGGACCTTTTGGGTGCCATCAGCGAGTTTTTGGATGGTAG
CATTGTGATTCCCCCGTCGGAGGTGGAGGGCCGAGACCTACTACGTTCGGTGGCTGCCTTCCAGCGAGAG
CTGCTGAGGAAGCGGCGGGAGCGGGAACAGACCAAGGTGGAGATGACCACCCGGGGGGGCTATGCGGCCC
CTGGCAAAGAGCTGTCTTTGGAGATGGGGGGCTCCGAGGCAACCTCTGAAGACGATCCCCTGCAGCGGAC
AGGCTCAGTGTTTGGGGGGCTAGTGCGAGATGTGAAGCGCCGTTACCCGCACTACCCCAGTGACCTGCGG
GATGCTCTGCACTCCCAGTGTGTGGCTGCTGTGCTCTTTATCTATTTCGCGGCCCTCAGTCCTGCTATCA
CCTTTGGGGGGCTTTTAGGAGAGAAAACAGAGGGGCTCATGGGCGTGTCAGAGCTGATTGTGTCCACGGC
TGTGCTTGGGGTCCTTTTCTCTCTGCTCGGGGCCCAGCCGCTGCTCGTGGTAGGCTTCTCTGGGCCTCTG
CTGGTCTTTGAAGAAGCTTTCTTCAAGTTCTGCCGAGCTCAGGACCTGGAGTACCTCACCGGTCGAGTGT
GGGTGGGCCTCTGGCTGGTGGTCTTCGTCCTGGCCCTGGTGGCTGCGGAGGGCAGCTTCCTTGTCCGCTA
CATCTCGCCATTCACCCAGGAGATCTTTGCTTTCCTCATCTCGCTAATTTTCATCTATGAGACGTTTCAC
AAGCTCTACAAGGTGTTCACAGAGCATCCTCTGCTGCCATTCTACCCACCGGATGAGGCCCTGGAGACTG
GCTTGGAACTGAATAGTAGTGCCCTGCCCCCCACAGAGGGACCACCAGGCCCGAGGAACCAACCCAACAC
AGCTCTGCTGTCCCTCATTCTCATGCTGGGGACGTTCCTCATTGCCTTCTTCTTGCGCAAGTTCAGGAAC
AGCCGCTTCCTGGGGGGCAAGGCTCGGCGCATCATCGGGGATTTTGGCATTCCCATCTCCATCCTGGTGA
TGGTCCTTGTGGATTATTCTATCACAGACACCTACACACAGAAGCTGACGGTGCCTACAGGGCTCTCAGT
GACTTCCCCTCATAAGCGCACATGGTTCATCCCACCCTTGGGCAGTGCCCGCCCCTTCCCACCATGGATG
ATGGTGGCTGCTGCTGTCCCCGCGCTCTTGGTCCTCATCCTCATATTCATGGAGACACAGATCACTGCGC
TCATTGTCAGCCAGAAGGCACGGAGGCTACTCAAGGGCTCCGGCTTCCATCTTGACCTGCTTTTGATTGG
CTCTTTGGGCGGCCTCTGTGGCTTGTTCGGCTTGCCCTGGCTCACAGCTGCCACTGTGCGCTCTGTCACT
CATGTCAACGCGTTGACGGTAATGCGGACTGCCATTGCGCCCGGTGACAAGCCCCAGATCCAGGAGGTGC
GGGAGCAGCGGGTCACCGGGGTGCTCATTGCCAGCCTCGTGGGCCTGTCTATCGTCATGGGAGCTGTGTT
GCGCCGGATCCCATTGGCTGTACTCTTCGGGATTTTCCTGTACATGGGCGTCACATCACTGTCTGGTATC
CAATTGTCCCAACGTCTGCTGCTCATTTTCATGCCAGCAAAGCACCATCCTGAGCAGCCCTACGTGACCA
AGGTGAAGACATGGCGGATGCACCTGTTCACCTGCATCCAGCTGGGCTGCATTGCACTTCTCTGGGTGGT
CAAGTCAACGGCGGCCTCGCTGGCCTTTCCTTTCCTGCTCTTGCTCACGGTGCCTCTGAGGCGTTGCCTT
TTGCCCCGGCTCTTCCAGGACAGGGAGCTGCAGGCGCTGGACTCTGAAGATGCGGAGCCGAACTTTGACG
AGGATGGTCAGGACGAGTACAACGAGCTGCACATGCCTGTGTGA

Translation (1227 aa):
MANGVIPPPGGASPLPQVRVPLEEPPLGPDVEEEDDDLGKTLAVSRFGDLISKTPAWDPEKPSRSYSERD
FEFHRHTSHHTHHPLSARLPPPHKLRRPPPTSARHTRRKRKKEKTSAPPSEGTPPIQEEGGAGAEEEEEE
EEEEEGESEAEPVEPLPPGPPQKAKFSIGSDEDDSPGLPVKAPCAKALPSVGLQSDQSPQRSGSSPSPRA
RASRISTEKSRPWSPSASYDLRERLCPGSALGNPGPEQRVPTDEAEAQMLGSADLDDMKSHRLEDNPGVR
RHLVKKPSRIQGGRGSPSGLAPILRRKKKKKKLDRRPHEVFVELNELMLDRSQEPHWRETARWIKFEEDV
EEETERWGKPHVASLSFRSLLELRRTIAQGAALLDLEQTTLPGIAHLVVETMIVSDQIRPEDRASVLRTL
LLKHSHPNDDKDSGFFPRNPSSSSVNSVLGNHHPTPSHGPDGAVPTMADDQGEPAPLWPHDPDAKEKPLH
MPGGDGHRGKSLKLLEKIPEDAEATVVLVGCVPFLEQPAAAFVRLSEAVLLESVLEVPVPVRFLFVMLGP
SHTSTDYHELGRSIATLMSDKLFHEAAYQADDRQDLLGAISEFLDGSIVIPPSEVEGRDLLRSVAAFQRE
LLRKRREREQTKVEMTTRGGYAAPGKELSLEMGGSEATSEDDPLQRTGSVFGGLVRDVKRRYPHYPSDLR
DALHSQCVAAVLFIYFAALSPAITFGGLLGEKTEGLMGVSELIVSTAVLGVLFSLLGAQPLLVVGFSGPL
LVFEEAFFKFCRAQDLEYLTGRVWVGLWLVVFVLALVAAEGSFLVRYISPFTQEIFAFLISLIFIYETFH
KLYKVFTEHPLLPFYPPDEALETGLELNSSALPPTEGPPGPRNQPNTALLSLILMLGTFLIAFFLRKFRN
SRFLGGKARRIIGDFGIPISILVMVLVDYSITDTYTQKLTVPTGLSVTSPHKRTWFIPPLGSARPFPPWM
MVAAAVPALLVLILIFMETQITALIVSQKARRLLKGSGFHLDLLLIGSLGGLCGLFGLPWLTAATVRSVT
HVNALTVMRTAIAPGDKPQIQEVREQRVTGVLIASLVGLSIVMGAVLRRIPLAVLFGIFLYMGVTSLSGI
QLSQRLLLIFMPAKHHPEQPYVTKVKTWRMHLFTCIQLGCIALLWVVKSTAASLAFPFLLLLTVPLRRCL
LPRLFQDRELQALDSEDAEPNFDEDGQDEYNELHMPV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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