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Report for CCDS15040.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15040.1 Public Mus musculus 1 Cxcr2 23 108 98 CCDS HistoryNCBI Gene:12765Re-query CCDS DB by CCDS ID:15040.1Re-query CCDS DB by GeneID:12765See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15040.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027372.7 ENSMUSP00000027372.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027372.7Link to Ensembl Protein Viewer:ENSMUSP00000027372.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000027372Re-query CCDS DB by Protein ID:ENSMUSP00000027372
Original member Current member EBI ENSMUST00000106899.3 ENSMUSP00000102512.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106899.3Link to Ensembl Protein Viewer:ENSMUSP00000102512.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000106899Re-query CCDS DB by Protein ID:ENSMUSP00000102512
Original member Current member NCBI NM_009909.3 NP_034039.1 Accepted alive Link to Nucleotide Sequence:NM_009909.3Link to Protein Sequence:NP_034039.1Re-query CCDS DB by Nucleotide ID:NM_009909Re-query CCDS DB by Protein ID:NP_034039Link to BLAST:NP_034039.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034039.1 359 P35343 359 100% 0 0

Chromosomal Locations for CCDS 15040.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 74158349 74159428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1080 nt):
ATGGGAGAATTCAAGGTGGATAAGTTCAACATTGAAGATTTCTTCAGTGGAGATCTTGATATTTTCAATT
ATAGCTCTGGCATGCCCTCTATTCTGCCAGATGCTGTCCCATGCCACTCAGAGAACCTGGAAATCAACAG
TTATGCTGTGGTTGTAATATACGTCCTGGTGACTCTGCTGAGCCTTGTGGGGAACTCCTTGGTGATGCTG
GTCATCTTATACAACCGGAGCACCTGCTCTGTCACCGATGTCTACCTGCTGAACCTGGCCATTGCTGACC
TGTTCTTTGCCCTGACCTTGCCTGTCTGGGCTGCATCTAAAGTAAATGGATGGACTTTTGGCTCAACCCT
GTGCAAGATATTCTCATACGTGAAGGAGGTTACCTTCTACAGCAGTGTTCTGCTACTAGCCTGCATCAGC
ATGGACCGCTACCTGGCCATTGTACATGCCACAAGTACACTGATCCAGAAGAGACACTTGGTCAAGTTTG
TGTGCATAGCCATGTGGTTACTATCAGTAATTCTGGCCCTGCCCATCTTAATTCTACGAAATCCTGTTAA
GGTAAACCTTTCTACCTTAGTCTGCTATGAGGATGTAGGTAACAATACATCCCGTTTGAGGGTCGTACTG
CGTATCCTGCCTCAGACTTTTGGCTTCCTCGTGCCGCTGCTCATCATGCTGTTCTGCTACGGGTTCACAC
TGCGCACCCTCTTTAAGGCCCACATGGGGCAGAAGCACCGGGCCATGCGGGTCATCTTCGCTGTCGTCCT
TGTCTTCCTGCTCTGCTGGCTGCCCTACAACCTGGTTCTGTTCACAGACACCCTCATGAGAACCAAGCTG
ATCAAGGAGACCTGTGAGCGCCGCGATGACATTGACAAGGCCTTGAATGCTACGGAGATTCTTGGCTTCC
TCCACAGCTGCCTTAACCCCATCATCTATGCCTTTATTGGCCAGAAATTTCGCCATGGACTTCTCAAGAT
CATGGCTACTTATGGCCTTGTCAGCAAGGAGTTCTTAGCCAAGGAGGGAAGGCCTTCTTTTGTTAGCTCG
TCTTCAGCAAACACCTCTACTACCCTCTAA

Translation (359 aa):
MGEFKVDKFNIEDFFSGDLDIFNYSSGMPSILPDAVPCHSENLEINSYAVVVIYVLVTLLSLVGNSLVML
VILYNRSTCSVTDVYLLNLAIADLFFALTLPVWAASKVNGWTFGSTLCKIFSYVKEVTFYSSVLLLACIS
MDRYLAIVHATSTLIQKRHLVKFVCIAMWLLSVILALPILILRNPVKVNLSTLVCYEDVGNNTSRLRVVL
RILPQTFGFLVPLLIMLFCYGFTLRTLFKAHMGQKHRAMRVIFAVVLVFLLCWLPYNLVLFTDTLMRTKL
IKETCERRDDIDKALNATEILGFLHSCLNPIIYAFIGQKFRHGLLKIMATYGLVSKEFLAKEGRPSFVSS
SSANTSTTL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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