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Report for CCDS14913.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14913.1 Public Mus musculus 1 Slc9a4 23 108 98 CCDS HistoryNCBI Gene:110895Re-query CCDS DB by CCDS ID:14913.1Re-query CCDS DB by GeneID:110895See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14913.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027233.8 ENSMUSP00000027233.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027233.8Link to Ensembl Protein Viewer:ENSMUSP00000027233.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000027233Re-query CCDS DB by Protein ID:ENSMUSP00000027233
Original member NCBI NM_177084.3 NP_796058.1 Updated not alive Link to Nucleotide Sequence:NM_177084.3Link to Protein Sequence:NP_796058.1Re-query CCDS DB by Nucleotide ID:NM_177084Re-query CCDS DB by Protein ID:NP_796058
Current member NCBI NM_177084.4 NP_796058.1 Accepted alive Link to Nucleotide Sequence:NM_177084.4Link to Protein Sequence:NP_796058.1Re-query CCDS DB by Nucleotide ID:NM_177084Re-query CCDS DB by Protein ID:NP_796058Link to BLAST:NP_796058.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_796058.1 797 Q8BUE1 797 100% 0 0

Chromosomal Locations for CCDS 14913.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 40580516 40580771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 40583859 40584322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 40600770 40601029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 40602853 40603070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 40607009 40607211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 40607749 40607835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 40610317 40610387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 40612123 40612284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 40619040 40619136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 40623393 40623524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 40624214 40624301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 40629237 40629592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2394 nt):
ATGGGTCCTGCAATGTTTATGGCTTTTCGTTTATGGAACTGGTTACTACTGCTGGCGGTCCTTACACGTT
CCGAAGCAACATCGTATGTTAATGAGTCCTCCAATCCCACTGCCCAGCAGGCACCTGATGCTCGGTTTGC
TGCTTCTAGCTCAGACCCCGATGAAGGGATATCTGTTTTTGAACTGGATTATGACTATGTTCAAATCCCT
TATGAAGTCACCCTCTGGATACTGCTCGCATCTCTTGCCAAGATAGGTTTCCATCTTTACCACAGGCTGC
CGCACCTCATGCCAGAGAGCTGCCTCCTCATCATCGTGGGAGCTCTGGTGGGCGGCATCATTTTTGGCAC
CCACCACAAATCGCCTCCGGTCATGGATTCAAGCATTTACTTCCTCTACCTTCTCCCACCTATTGTGTTG
GAAAGCGGCTACTTCATGCCCACCAGGCCCTTCTTTGAGAATATTGGCTCCATCCTGTGGTGGGCAGGCC
TGGGAGCCCTGATCAATGCCTTTGGCATTGGGCTCTCTCTCTACTTCATCTGTCAGATCAAGGCCTTTGG
CCTTGGTGACATCAACCTGCTACACAATCTGCTATTTGGCAGCCTCATCTCAGCGGTCGACCCCGTGGCT
GTGCTGGCTGTTTTTGAGGAGGCACGTGTGAATGAACAGCTTTACATGATGATCTTCGGGGAGGCCCTGC
TCAATGATGGAATCAGCGTGGTCTTATACAACATACTAATTGCCTTCACTAAGATGCACAAATTTGAGGA
CATAGAAGCGGTGGACATTTTGGCTGGGTGTGCCAGATTCGTCATCGTGGGGTGCGGGGGAGTATTTTTC
GGCATCATATTTGGATTCATTTCCGCATTTATCACACGTTTCACTCAGAACATCTCTGCGATTGAGCCCC
TCATCGTCTTCATGTTCAGCTATCTGTCTTACTTAGCAGCCGAGACGCTTTATCTCTCAGGAATCCTGGC
CATCACAGCTTGCGCAGTGACCATGAAAAAGTACGTGGAAGAGAACGTGTCCCAGACATCATACACGACC
ATCAAGTACTTCATGAAGATGCTGAGCAGCGTGAGTGAGACCCTGATCTTCATCTTCATGGGCGTGTCCA
CCATTGGGAAGAACCATGAGTGGAACTGGGCTTTCATCTGCTTCACTCTGCTCTTCTGCCAGATCTGGAG
AGCAATCAGCGTATTTACCCTCTTCTATGTCAGTAACCAGTTTCGGACTTTCCCCTTCTCCATCAAGGAC
CAGTTCATAATATTCTACAGCGGTGTGAGAGGAGCAGGAAGCTTCTCCCTTGCGTTTTTGCTTCCTCTGT
CCCTTTTTCCTAGGAAGAAACTGTTTGTTACGGCAACTTTAGTAGTTACATACTTTACTGTATTTTTTCA
GGGAATCACAATTGGCCCACTGGTCAGGTATCTGGATGTCAGAAAGACCAATAAAAAAGAATCCATCAAC
GAAGAGCTTCACAGCCGTCTTATGGATCATCTGAAGGCTGGGATTGAAGATGTGTGTGGGCAGTGGAGTC
ACTACCAAGTGAGAGATAAGTTCAAGAAGTTTGACCATAGATATTTACGGAAAATTCTAATCCGGAGGAA
CCTGCCAAAATCAAGCATCGTTTCTTTGTATAAGAAGCTGGAGATGAAACAGGCCATTGAGATGGTAGAG
ACTGGGATACTGAGCTCTGTGGCTTCTCCCACACCCTATCAGTCTGAGAGGATACAGGGAATCAAGCGGC
TTTCTCCTGAAGACGTGGAGTCCATGCGGGACATTCTGACAAGAAGCATGTACCAAGTTCGACAAAGAAC
CCTATCCTACAACAAATACAACCTCAAACCCCAAACAAGTGAGAAGCAAGCCAAAGAGATTCTGATCCGT
CGCCAGAACACCTTGAGGGAGAGCATGCGGAAAGGCCAGAGTCTGCCCTGGGGAAAGCCGGCAGGCACCA
AGAACTTTCGATATCTCTCCTTTCCTTATAGCAATCCTCAGGCAGCAAGGAGAGAGGCAAGGGCTGCTGA
ACCCACAGATGATGATGGCACTGATTCAGGATTCCAGCCCTTGATGTTCAGCATACACTCAAGAGCAGGG
TCCCTTCAGGAAAGGCGACAGACCCAGGCAGTGATCCCTATGAAGAGGCTGCAGAGAGGAGAGAAGGCGC
TTAGCTTCAGCTACCGAAGCAACACCAGCTGGGAGGACCAGGCCGGATGGCGCAGGATGGATGTCCTCCG
GCCCAAGCCGCTGTTCTATGCAGTAGCCGAGGAGTATGACTCTGGAGAGCAGACGGAGGAGGAGACCTCA
GCAATCCTGTCCAGATGGACAGCTGAACACAGACACAGCACAGAGCACCACAAGTCCCACAGTCCTTTGC
TCCATAGGAAATAG

Translation (797 aa):
MGPAMFMAFRLWNWLLLLAVLTRSEATSYVNESSNPTAQQAPDARFAASSSDPDEGISVFELDYDYVQIP
YEVTLWILLASLAKIGFHLYHRLPHLMPESCLLIIVGALVGGIIFGTHHKSPPVMDSSIYFLYLLPPIVL
ESGYFMPTRPFFENIGSILWWAGLGALINAFGIGLSLYFICQIKAFGLGDINLLHNLLFGSLISAVDPVA
VLAVFEEARVNEQLYMMIFGEALLNDGISVVLYNILIAFTKMHKFEDIEAVDILAGCARFVIVGCGGVFF
GIIFGFISAFITRFTQNISAIEPLIVFMFSYLSYLAAETLYLSGILAITACAVTMKKYVEENVSQTSYTT
IKYFMKMLSSVSETLIFIFMGVSTIGKNHEWNWAFICFTLLFCQIWRAISVFTLFYVSNQFRTFPFSIKD
QFIIFYSGVRGAGSFSLAFLLPLSLFPRKKLFVTATLVVTYFTVFFQGITIGPLVRYLDVRKTNKKESIN
EELHSRLMDHLKAGIEDVCGQWSHYQVRDKFKKFDHRYLRKILIRRNLPKSSIVSLYKKLEMKQAIEMVE
TGILSSVASPTPYQSERIQGIKRLSPEDVESMRDILTRSMYQVRQRTLSYNKYNLKPQTSEKQAKEILIR
RQNTLRESMRKGQSLPWGKPAGTKNFRYLSFPYSNPQAARREARAAEPTDDDGTDSGFQPLMFSIHSRAG
SLQERRQTQAVIPMKRLQRGEKALSFSYRSNTSWEDQAGWRRMDVLRPKPLFYAVAEEYDSGEQTEEETS
AILSRWTAEHRHSTEHHKSHSPLLHRK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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