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Report for CCDS1490.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1490.2 Public Homo sapiens 1 TRAF3IP3 24 110 108 CCDS HistoryNCBI Gene:80342Re-query CCDS DB by CCDS ID:1490.2Re-query CCDS DB by GeneID:80342See the combined annotation on chromosome 1 in Sequence Viewer

Public Note for CCDS 1490.1
The coding region has been updated to represent an alternative splicing pattern that is more supported by the available transcript and protein data.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 1490.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000367024.5 ENSP00000355991.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000367024.5Link to Ensembl Protein Viewer:ENSP00000355991.1Re-query CCDS DB by Nucleotide ID:ENST00000367024Re-query CCDS DB by Protein ID:ENSP00000355991
Original member Current member EBI ENST00000367025.8 ENSP00000355992.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000367025.8Link to Ensembl Protein Viewer:ENSP00000355992.3Re-query CCDS DB by Nucleotide ID:ENST00000367025Re-query CCDS DB by Protein ID:ENSP00000355992
Original member Current member NCBI NM_001320143.2 NP_001307072.1 Accepted alive Link to Nucleotide Sequence:NM_001320143.2Link to Protein Sequence:NP_001307072.1Re-query CCDS DB by Nucleotide ID:NM_001320143Re-query CCDS DB by Protein ID:NP_001307072Link to BLAST:NP_001307072.1
Original member Current member NCBI NM_025228.4 NP_079504.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_025228.4Link to Protein Sequence:NP_079504.2Re-query CCDS DB by Nucleotide ID:NM_025228Re-query CCDS DB by Protein ID:NP_079504Link to BLAST:NP_079504.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001307072.1 551 Q9Y228-1 551 100% 0 0
NP_079504.2 551 Q9Y228-1 551 100% 0 0

Chromosomal Locations for CCDS 1490.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 209760040 209760384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 209762515 209762662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 209762813 209762870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 209763068 209763092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 209763363 209763392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 209763492 209763587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 209772948 209773019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 209775349 209775489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 209775599 209775736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 209777352 209777487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 209778111 209778173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 209779315 209779374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 209780470 209780606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 209781345 209781458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 209782056 209782148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1656 nt):
ATGATCAGCCCAGACCCCAGGCCCTCCCCTGGCTTGGCCCGGTGGGCTGAGAGCTATGAGGCCAAGTGTG
AGCGCAGGCAAGAGATCCGTGAAAGCCGCCGCTGCCGTCCCAATGTGACCACTTGCCGCCAGGTGGGGAA
GACGCTGAGGATCCAACAGAGAGAGCAGCTCCAGAGAGCTCGACTGCAGCAGTTCTTCAGGAGGAGGAAC
CTGGAGCTAGAGGAGAAGGGCAAAGCGCAGCATCCCCAGGCCAGGGAGCAAGGGCCCTCCAGGCGGCCAG
GACAGGTGACTGTCCTCAAGGAACCCTTGTCTTGTGCCAGAAGGATTTCTTCTCCCAGAGAGCAGGTGAC
AGGCACCAGCTCTGAAGTCTTTCCAGCCCAGCATCCTCCTCCCTCAGGCATCTGCAGGGATCTGTCTGAC
CACCTCTCCTCACAGGCTGGGGGCCTTCCTCCACAGGACACTCCCATCAAGAAGCCACCCAAACACCACC
GTGGTACTCAGACAAAGGCAGAAGGACCAACAATTAAGAACGATGCCAGTCAGCAAACCAATTACGGAGT
TGCAGTTCTGGATAAGGAAATCATCCAGCTTTCTGATTACCTCAAAGAGGCCCTACAAAGGGAGCTGGTC
CTAAAACAGAAAATGGTGATTCTCCAAGACCTACTGTCCACTCTGATTCAGGCCTCTGACAGCTCTTGGA
AGGGACAGCTTAATGAAGACAAACTGAAGGGGAAACTGAGATCCTTAGAAAACCAGCTATACACCTGTAC
CCAGAAATACTCCCCTTGGGGAATGAAAAAAGTACTACTGGAGATGGAAGACCAGAAAAACAGCTATGAG
CAGAAGGCCAAGGAGTCACTGCAGAAAGTGCTGGAGGAGAAAATGAATGCAGAGCAGCAACTACAGAGCA
CACAGCGATCCCTGGCCCTGGCAGAGCAGAAGTGTGAAGAGTGGAGGAGCCAGTATGAGGCTCTGAAGGA
GGACTGGAGGACCCTTGGGACCCAGCACAGGGAGCTGGAGAGCCAACTCCACGTGCTTCAGTCCAAACTG
CAGGGAGCAGATAGCAGGGACTTACAGATGAACCAGGCCCTGCGATTTTTGGAAAATGAGCACCAGCAAC
TGCAGGCCAAGATTGAATGCCTGCAAGGGGACAGAGACCTGTGCAGCTTGGATACCCAGGACCTACAAGA
TCAACTAAAAAGGTCAGAGGCAGAGAAACTCACCCTGGTGACCAGAGTACAGCAGTTGCAGGGTTTGCTT
CAAAATCAATCCTTACAGCTTCAAGAACAGGAGAAACTCTTAACAAAGAAAGATCAGGCTTTGCCCGTGT
GGAGTCCAAAGTCCTTCCCTAACGAAGTGGAGCCTGAGGGTACAGGGAAGGAGAAAGACTGGGATCTCAG
AGACCAGCTGCAAAAGAAGACTTTGCAGCTCCAGGCCAAGGAAAAGGAGTGCAGAGAACTGCATTCAGAA
TTAGACAACCTCAGTGACGAGTATCTCTCCTGCCTGCGTAAGCTGCAGCACTGTCGAGAAGAGCTGAACC
AGAGCCAGCAGCTGCCTCCCAGAAGGCAATGTGGGCGATGGCTCCCAGTGCTGATGGTGGTGATTGCTGC
AGCACTGGCAGTGTTCCTGGCCAATAAAGACAACCTGATGATCTGA

Translation (551 aa):
MISPDPRPSPGLARWAESYEAKCERRQEIRESRRCRPNVTTCRQVGKTLRIQQREQLQRARLQQFFRRRN
LELEEKGKAQHPQAREQGPSRRPGQVTVLKEPLSCARRISSPREQVTGTSSEVFPAQHPPPSGICRDLSD
HLSSQAGGLPPQDTPIKKPPKHHRGTQTKAEGPTIKNDASQQTNYGVAVLDKEIIQLSDYLKEALQRELV
LKQKMVILQDLLSTLIQASDSSWKGQLNEDKLKGKLRSLENQLYTCTQKYSPWGMKKVLLEMEDQKNSYE
QKAKESLQKVLEEKMNAEQQLQSTQRSLALAEQKCEEWRSQYEALKEDWRTLGTQHRELESQLHVLQSKL
QGADSRDLQMNQALRFLENEHQQLQAKIECLQGDRDLCSLDTQDLQDQLKRSEAEKLTLVTRVQQLQGLL
QNQSLQLQEQEKLLTKKDQALPVWSPKSFPNEVEPEGTGKEKDWDLRDQLQKKTLQLQAKEKECRELHSE
LDNLSDEYLSCLRKLQHCREELNQSQQLPPRRQCGRWLPVLMVVIAAALAVFLANKDNLMI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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