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Report for CCDS149.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
149.1 Public Homo sapiens 1 PRAMEF2 24 110 108 CCDS HistoryNCBI Gene:65122Re-query CCDS DB by CCDS ID:149.1Re-query CCDS DB by GeneID:65122See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 149.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000240189.2 ENSP00000240189.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000240189.2Link to Ensembl Protein Viewer:ENSP00000240189.2Re-query CCDS DB by Nucleotide ID:ENST00000240189Re-query CCDS DB by Protein ID:ENSP00000240189
Original member Current member NCBI NM_023014.1 NP_075390.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_023014.1Link to Protein Sequence:NP_075390.1Re-query CCDS DB by Nucleotide ID:NM_023014Re-query CCDS DB by Protein ID:NP_075390Link to BLAST:NP_075390.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_075390.1 474 O60811 474 100% 0 0

Chromosomal Locations for CCDS 149.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 12859010 12859296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 12859693 12860271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 12861221 12861779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1425 nt):
ATGAGCATCCAGGCCCCACCGAGACTACTGGAGCTGGCGGGGCAGAGCCTGCTGAGAGACCAGGCCTTGT
CCATCTCTGCCATGGAGGAGCTGCCCAGGGTGCTCTATCTCCCACTCTTCAGGGAGGCCTTCAGCAGGAG
ACACTTCCAGACTCTGACGGTGATGGTGCAGGCCTGGCCTTTCACCTGCCTCCCTCTGGTATCGCTGATG
AAGACGCTTCATCTGGAGCCATTGAAAGCATTGCTGGAAGGGCTTCATATGCTGCTTACACAGAAGGATC
GCCCCAGGAGGTGGAAACTTCAAGTGCTGGATTTGCGGGATGTTGATGAGAATTTCTGGGCCAGATGGCC
TGGAGCCTGGGCCCTGTCCTGCTTCCCAGAGGCCATGAGTAAGAGGCAGACAGCAGAGGACTGTCCAAGG
ACGGGAGAGCACCAGCCCTTAAAGGTGTTCATAGACATCTGCCTCAAGGAAATACCCCAGGATGAATGCC
TGAGATACCTCTTCCAGTGGGTTTACCAAAGGAGAGGTTTAGTACACCTGTGCTGTAGTAAGCTGGTCAA
TTATCTAACGCCAATTAAATATCTCAGAAAGTCATTGAAAATAATATACATTAATAGTATTGGGGAGCTG
GAAATTCACAACACGTGCTGGCCACATCTGATAAGAAAGCTTTATTGTTACCTGAAGGAGATGAAGACTC
TTTGCAAACTCGTTTTCTCCAGGTGCCATCATTACACGTCAGATAATGAACTCGAGGGATGGTTAGTCAC
CAGATTCACCTCTGTGTTCCTCAGGCTGGAACACCTCCAGTTGCTTAAAATAAAATTGATCACCTTCTTC
AGTGGGCACCTGGAACAGCTGATCAGGTGCCTCCAGAACCCCTTGGAGAACTTGGAATTAACTTGTGGCA
ACCTATTAGAAGAGGACTTGAAGTGTCTCTCCCAGTTCCCAAGCCTCGGTTACCTAAAGCATCTGAATCT
CAGCTACGTGCTGCTGTTCCGCATCAGTCTTGAACCCCTAGGAGCTCTGCTAGAGAAAATTGCTGCCTCT
CTCGAGACCCTCGTGTTAGAGGGCTGTCAGATCCACTACTCCCAACTCAGTGCCATCCTGCCTGGCCTGA
GCTGCTGCTCCCAGCTCACCACCTTCTACTTTGGCAGCAATTGCATGTCTATTGACGCCCTGAAGGACCT
GCTGCGCCACACCAGTGGGCTGAGCAAGTTAAGCCTGGAGACGTATCCTGCCCCTGAGGAGAGTTTGAAT
TCCTTGGTTCGTGTCAATTGGGAGATCTTCACCCCACTTCGGGCTGAGCTGATGTGTACACTGAGGGAAT
TCAGGCAGCCCAAGAGGATCTTCATTGGCCCCACCCCCTGCCCTTCCTGTGGCTCATCACCGTCTGAGGA
ACTGGAGCTCCATCTTTGCTGCTAG

Translation (474 aa):
MSIQAPPRLLELAGQSLLRDQALSISAMEELPRVLYLPLFREAFSRRHFQTLTVMVQAWPFTCLPLVSLM
KTLHLEPLKALLEGLHMLLTQKDRPRRWKLQVLDLRDVDENFWARWPGAWALSCFPEAMSKRQTAEDCPR
TGEHQPLKVFIDICLKEIPQDECLRYLFQWVYQRRGLVHLCCSKLVNYLTPIKYLRKSLKIIYINSIGEL
EIHNTCWPHLIRKLYCYLKEMKTLCKLVFSRCHHYTSDNELEGWLVTRFTSVFLRLEHLQLLKIKLITFF
SGHLEQLIRCLQNPLENLELTCGNLLEEDLKCLSQFPSLGYLKHLNLSYVLLFRISLEPLGALLEKIAAS
LETLVLEGCQIHYSQLSAILPGLSCCSQLTTFYFGSNCMSIDALKDLLRHTSGLSKLSLETYPAPEESLN
SLVRVNWEIFTPLRAELMCTLREFRQPKRIFIGPTPCPSCGSSPSEELELHLCC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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