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Report for CCDS14594.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14594.1 Public Homo sapiens X RHOXF2 24 110 108 CCDS HistoryNCBI Gene:84528Re-query CCDS DB by CCDS ID:14594.1Re-query CCDS DB by GeneID:84528See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14594.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000371388.5 ENSP00000360441.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000371388.5Link to Ensembl Protein Viewer:ENSP00000360441.3Re-query CCDS DB by Nucleotide ID:ENST00000371388Re-query CCDS DB by Protein ID:ENSP00000360441
Original member Current member NCBI NM_032498.3 NP_115887.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032498.3Link to Protein Sequence:NP_115887.1Re-query CCDS DB by Nucleotide ID:NM_032498Re-query CCDS DB by Protein ID:NP_115887Link to BLAST:NP_115887.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_115887.1 288 Q9BQY4 288 100% 0 0

Chromosomal Locations for CCDS 14594.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 120158751 120158829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 120159015 120159426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 120160358 120160403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 120163458 120163787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (867 nt):
ATGGAGCCTCCGGACCAGTGTAGCCAGTATATGACCAGCTTGCTCAGCCCTGCAGTCGACGACGAGAAAG
AACTACAGGATATGAATGCTATGGTGCTGTCGCTTACTGAAGAGGTCAAAGAGGAGGAAGAGGATGCACA
GCCTGAGCCTGAGCAAGGCACAGCAGCAGGAGAAAAGTTAAAGTCGGCAGGAGCCCAAGGCGGAGAAGAA
AAAGATGGCGGCGGAGAAGAAAAAGATGGCGGCGGCGCCGGAGTTCCTGGCCACCTATGGGAAGGAGACC
TCGAGGGCACCAGCGGCAGCGATGGCAACGTTGAGGACAGCGACCAGAGCGAGAAGGAACCTGGGCAGCA
GTATTCGCGCCCACAGGGCGCCGTCGGGGGGCTGGAGCCTGGCAACGCGCAGCAGCCCAACGTCCACGCC
TTCACCCCATTGCAGCTGCAGGAGCTGGAGCGCATTTTCCAACGCGAGCAGTTCCCCAGTGAGTTCCTGC
GAAGGAGGCTGGCAAGAAGCATGAATGTGACTGAACTCGCAGTGCAGATTTGGTTTGAGAATAGAAGAGC
CAAATGGAGGAGACATCAGAGGGCATTAATGGCAAGAAACATGCTGCCCTTCATGGCAGTGGGCCAGCCT
GTCATGGTAACCGCAGCTGAGGCCATAACGGCACCCTTGTTCATCAGCGGGATGAGAGATGATTACTTCT
GGGACCACAGCCATTCCAGCAGCCTGTGTTTCCCCATGCCACCCTTTCCTCCTCCGTCCTTGCCCCTTCC
ACTCATGCTTCTTCCACCTATGCCACCCGCTGGCCAGGCTGAATTTGGCCCATTCCCTTTTGTTATCGTG
CCTTCTTTCACATTCCCCAATGTCTAA

Translation (288 aa):
MEPPDQCSQYMTSLLSPAVDDEKELQDMNAMVLSLTEEVKEEEEDAQPEPEQGTAAGEKLKSAGAQGGEE
KDGGGEEKDGGGAGVPGHLWEGDLEGTSGSDGNVEDSDQSEKEPGQQYSRPQGAVGGLEPGNAQQPNVHA
FTPLQLQELERIFQREQFPSEFLRRRLARSMNVTELAVQIWFENRRAKWRRHQRALMARNMLPFMAVGQP
VMVTAAEAITAPLFISGMRDDYFWDHSHSSSLCFPMPPFPPPSLPLPLMLLPPMPPAGQAEFGPFPFVIV
PSFTFPNV


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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