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Report for CCDS14555.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14555.1 Public Homo sapiens X CAPN6 24 110 108 CCDS HistoryNCBI Gene:827Re-query CCDS DB by CCDS ID:14555.1Re-query CCDS DB by GeneID:827See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14555.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000324068.2 ENSP00000317214.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000324068.2Link to Ensembl Protein Viewer:ENSP00000317214.1Re-query CCDS DB by Nucleotide ID:ENST00000324068Re-query CCDS DB by Protein ID:ENSP00000317214
Original member Current member NCBI NM_014289.4 NP_055104.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014289.4Link to Protein Sequence:NP_055104.2Re-query CCDS DB by Nucleotide ID:NM_014289Re-query CCDS DB by Protein ID:NP_055104Link to BLAST:NP_055104.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055104.2 641 Q9Y6Q1 641 100% 0 0

Chromosomal Locations for CCDS 14555.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 111246577 111246759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 111247368 111247504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 111247871 111247992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 111248569 111248771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 111248935 111249057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 111250917 111251103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 111251209 111251286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 111251549 111251742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 111252307 111252499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 111253008 111253216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 111254272 111254403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 111263772 111263936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1926 nt):
ATGGGTCCTCCTCTGAAGCTCTTCAAAAACCAGAAATACCAGGAACTGAAGCAGGAATGCATCAAAGACA
GCAGACTTTTCTGTGATCCAACATTTCTGCCTGAGAATGATTCTCTTTTCTACAACCGACTGCTTCCTGG
AAAGGTGGTGTGGAAACGTCCCCAGGACATCTGTGATGACCCCCATCTGATTGTGGGCAACATTAGCAAC
CACCAGCTGACCCAAGGGAGACTGGGGCACAAGCCAATGGTTTCTGCATTTTCCTGTTTGGCTGTTCAGG
AGTCTCATTGGACAAAGACAATTCCCAACCATAAGGAACAGGAATGGGACCCTCAAAAAACAGAAAAATA
CGCTGGGATATTTCACTTTCGTTTCTGGCATTTTGGAGAATGGACTGAAGTGGTGATTGATGACTTGTTG
CCCACCATTAACGGAGATCTGGTCTTCTCTTTCTCCACTTCCATGAATGAGTTTTGGAATGCTCTGCTGG
AAAAAGCTTATGCAAAGCTGCTAGGCTGTTATGAGGCCCTGGATGGTTTGACCATCACTGATATTATTGT
GGACTTCACGGGCACATTGGCTGAAACTGTTGACATGCAGAAAGGAAGATACACTGAGCTTGTTGAGGAG
AAGTACAAGCTATTCGGAGAACTGTACAAAACATTTACCAAAGGTGGTCTGATCTGCTGTTCCATTGAGT
CTCCCAATCAGGAGGAGCAAGAAGTTGAAACTGATTGGGGTCTGCTGAAGGGCCATACCTATACCATGAC
TGATATTCGCAAAATTCGTCTTGGAGAGAGACTTGTGGAAGTCTTCAGTGCTGAGAAGGTGTATATGGTT
CGCCTGAGAAACCCCTTGGGAAGACAGGAATGGAGTGGCCCCTGGAGTGAAATTTCTGAAGAGTGGCAGC
AACTGACTGCATCAGATCGCAAGAACCTGGGGCTTGTTATGTCTGATGATGGAGAGTTTTGGATGAGCTT
GGAGGACTTTTGCCGCAACTTTCACAAACTGAATGTCTGCCGCAATGTGAACAACCCTATTTTTGGCCGA
AAGGAGCTGGAATCGGTGTTGGGATGCTGGACTGTGGATGATGATCCCCTGATGAACCGCTCAGGAGGCT
GCTATAACAACCGTGATACCTTCCTGCAGAATCCCCAGTACATCTTCACTGTGCCTGAGGATGGGCACAA
GGTCATTATGTCACTGCAGCAGAAGGACCTGCGCACTTACCGCCGAATGGGAAGACCTGACAATTACATC
ATTGGCTTTGAGCTCTTCAAGGTGGAGATGAACCGCAAATTCCGCCTCCACCACCTCTACATCCAGGAGC
GTGCTGGGACTTCCACCTATATTGACACCCGCACAGTGTTTCTGAGCAAGTACCTGAAGAAGGGCAACTA
TGTGCTTGTCCCAACCATGTTCCAGCATGGTCGCACCAGCGAGTTTCTCCTGAGAATCTTCTCTGAAGTG
CCTGTCCAGCTCAGGGAACTGACTCTGGACATGCCCAAAATGTCCTGCTGGAACCTGGCTCGTGGCTACC
CGAAAGTAGTTACTCAGATCACTGTTCACAGTGCTGAGGACCTGGAGAAGAAGTATGCCAATGAAACTGT
AAACCCATATTTGGTCATCAAATGTGGAAAGGAGGAAGTCCGTTCTCCTGTCCAGAAGAATACAGTTCAT
GCCATTTTTGACACCCAGGCCATTTTCTACAGAAGGACCACTGACATTCCTATTATAGTACAGGTCTGGA
ACAGCCGAAAATTCTGTGATCAGTTCTTGGGGCAGGTTACTCTGGATGCTGACCCCAGCGACTGCCGTGA
TCTGAAGTCTCTGTACCTGCGTAAGAAGGGTGGTCCAACTGCCAAAGTCAAGCAAGGCCACATCAGCTTC
AAGGTTATTTCCAGCGATGATCTCACTGAGCTCTAA

Translation (641 aa):
MGPPLKLFKNQKYQELKQECIKDSRLFCDPTFLPENDSLFYNRLLPGKVVWKRPQDICDDPHLIVGNISN
HQLTQGRLGHKPMVSAFSCLAVQESHWTKTIPNHKEQEWDPQKTEKYAGIFHFRFWHFGEWTEVVIDDLL
PTINGDLVFSFSTSMNEFWNALLEKAYAKLLGCYEALDGLTITDIIVDFTGTLAETVDMQKGRYTELVEE
KYKLFGELYKTFTKGGLICCSIESPNQEEQEVETDWGLLKGHTYTMTDIRKIRLGERLVEVFSAEKVYMV
RLRNPLGRQEWSGPWSEISEEWQQLTASDRKNLGLVMSDDGEFWMSLEDFCRNFHKLNVCRNVNNPIFGR
KELESVLGCWTVDDDPLMNRSGGCYNNRDTFLQNPQYIFTVPEDGHKVIMSLQQKDLRTYRRMGRPDNYI
IGFELFKVEMNRKFRLHHLYIQERAGTSTYIDTRTVFLSKYLKKGNYVLVPTMFQHGRTSEFLLRIFSEV
PVQLRELTLDMPKMSCWNLARGYPKVVTQITVHSAEDLEKKYANETVNPYLVIKCGKEEVRSPVQKNTVH
AIFDTQAIFYRRTTDIPIIVQVWNSRKFCDQFLGQVTLDADPSDCRDLKSLYLRKKGGPTAKVKQGHISF
KVISSDDLTEL


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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