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Report for CCDS14476.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14476.2 Public Homo sapiens X XKRX 24 110 108 CCDS HistoryNCBI Gene:402415Re-query CCDS DB by CCDS ID:14476.2Re-query CCDS DB by GeneID:402415See the combined annotation on chromosome X in Sequence Viewer

Public Note for CCDS 14476.1
The coding region has been updated to represent a downstream start codon that is more supported by the available conservation data. The upstream start codon annotated in the previous representation is unlikely to be used due to the presence of an upstream ORF that overlaps it.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 14476.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000372956.3 ENSP00000362047.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000372956.3Link to Ensembl Protein Viewer:ENSP00000362047.2Re-query CCDS DB by Nucleotide ID:ENST00000372956Re-query CCDS DB by Protein ID:ENSP00000362047
Original member Current member NCBI NM_212559.3 NP_997724.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_212559.3Link to Protein Sequence:NP_997724.2Re-query CCDS DB by Nucleotide ID:NM_212559Re-query CCDS DB by Protein ID:NP_997724Link to BLAST:NP_997724.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_997724.2 449 Q6PP77-1 449 100% 0 0

Chromosomal Locations for CCDS 14476.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 100914338 100915083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100922793 100923061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100927970 100928304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1350 nt):
ATGGACAGAGTTTATGAAATTCCTGAGGAGCCAAATGTGGATCCGGTTTCATCTCTGGAGGAAGATGTCA
TCCGTGGAGCCAACCCCCGATTTACTTTTCCATTTAGCATCCTTTTCTCCACCTTTTTGTACTGTGGGGA
GGCTGCATCTGCTTTGTACATGGTTAGAATCTATCGAAAGAATAGTGAAACTTACTGGATGACATACACC
TTTTCTTTCTTTATGTTTTCATCCATTATGGTCCAGTTGACCCTCATTTTTGTCCACAGAGATCTAGCCA
AAGATAAACCGCTATCATTATTTATGCATCTAATCCTCTTGGGACCTGTTATCAGATGTTTGGAGGCCAT
GATTAAGTACCTCACACTGTGGAAGAAAGAGGAGCAGGAGGAGCCCTATGTCAGCCTCACCCGAAAGAAG
ATGCTAATAGATGGCGAGGAGGTGCTGATAGAATGGGAGGTGGGCCACTCCATCCGGACCCTGGCTATGC
ACCGCAATGCCTACAAACGTATGTCACAGATCCAAGCCTTCCTGGGCTCAGTGCCCCAGCTGACCTATCA
GCTCTATGTGAGCCTGATCTCTGCAGAGGTTCCCCTGGGTAGAGTTGTGCTAATGGTATTTTCCCTGGTA
TCTGTCACCTATGGGGCCACCCTTTGCAATATGTTGGCTATCCAGATCAAGTACGATGACTACAAGATTC
GCCTTGGGCCACTAGAAGTCCTCTGCATCACCATCTGGCGGACATTGGAGATCACTTCCCGCCTCCTGAT
TCTGGTGCTCTTCTCAGCCACTTTGAAATTGAAGGCTGTGCCCTTCCTAGTGCTCAACTTCCTGATCATC
CTCTTTGAGCCCTGGATTAAGTTCTGGAGAAGTGGTGCCCAGATGCCCAATAACATTGAGAAAAACTTCA
GCCGGGTCGGCACTCTGGTGGTCCTGATTTCAGTCACCATCCTCTATGCTGGCATCAACTTCTCTTGCTG
GTCAGCTTTGCAGTTGAGGTTGGCAGACAGAGATCTCGTCGACAAAGGGCAGAACTGGGGACATATGGGC
CTGCACTATAGTGTGAGGTTGGTAGAGAATGTGATCATGGTCTTGGTTTTTAAGTTCTTTGGAGTGAAAG
TGTTACTGAATTACTGTCATTCCTTGATTGCCTTGCAGCTCATTATTGCTTATCTGATTTCCATTGGCTT
CATGCTCCTTTTCTTCCAGTACTTGCATCCATTGCGCTCACTCTTCACCCATAATGTAGTAGACTACCTC
CATTGTGTCTGCTGTCACCAGCACCCTCGGACCAGGGTTGAGAACTCAGAGCCACCCTTTGAGACTGAAG
CAAGGCAAAGTGTTGTCTGA

Translation (449 aa):
MDRVYEIPEEPNVDPVSSLEEDVIRGANPRFTFPFSILFSTFLYCGEAASALYMVRIYRKNSETYWMTYT
FSFFMFSSIMVQLTLIFVHRDLAKDKPLSLFMHLILLGPVIRCLEAMIKYLTLWKKEEQEEPYVSLTRKK
MLIDGEEVLIEWEVGHSIRTLAMHRNAYKRMSQIQAFLGSVPQLTYQLYVSLISAEVPLGRVVLMVFSLV
SVTYGATLCNMLAIQIKYDDYKIRLGPLEVLCITIWRTLEITSRLLILVLFSATLKLKAVPFLVLNFLII
LFEPWIKFWRSGAQMPNNIEKNFSRVGTLVVLISVTILYAGINFSCWSALQLRLADRDLVDKGQNWGHMG
LHYSVRLVENVIMVLVFKFFGVKVLLNYCHSLIALQLIIAYLISIGFMLLFFQYLHPLRSLFTHNVVDYL
HCVCCHQHPRTRVENSEPPFETEARQSVV


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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