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Report for CCDS14436.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14436.2 Public Homo sapiens X MAGT1 24 110 108 CCDS HistoryNCBI Gene:84061Re-query CCDS DB by CCDS ID:14436.2Re-query CCDS DB by GeneID:84061See the combined annotation on chromosome X in Sequence Viewer

Public Note for CCDS 14436.1
The coding region has been updated to extend the N-terminus to one that is more supported by available transcript and conservation data. Two possible start codons are present in this update. The upstream AUG has a weak Kozak sequence, while the downstream AUG has a strong Kozak sequence. Due to leaky scanning by ribosomes, it is possible that some ribosomes may initiate translation from the downstream AUG codon while others start from the upstream AUG. Translation initiation from the downstream AUG would result in a protein that is 32 aa shorter at the N-terminus.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 14436.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000691993.1 ENSP00000509067.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000691993.1Link to Ensembl Protein Viewer:ENSP00000509067.1Re-query CCDS DB by Nucleotide ID:ENST00000691993Re-query CCDS DB by Protein ID:ENSP00000509067
Original member Current member NCBI NM_032121.5 NP_115497.4 Accepted alive Link to Nucleotide Sequence:NM_032121.5Link to Protein Sequence:NP_115497.4Re-query CCDS DB by Nucleotide ID:NM_032121Re-query CCDS DB by Protein ID:NP_115497Link to BLAST:NP_115497.4

Chromosomal Locations for CCDS 14436.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 77829220 77829235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 77830805 77830895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 77841246 77841320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 77853901 77853964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 77855501 77855590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 77856733 77856873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 77857357 77857497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 77870808 77870925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 77875428 77875597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 77895309 77895506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1104 nt):
ATGAGGAAAGGCAAGGGGCCGATTTGCCTGTTCTCACGCCCCACCCTCAGACCTAGCCGGAGCAAAGTTT
CACTTATAGAAGGGAGAGGAGCGAACATGGCAGCGCGTTGGCGGTTTTGGTGTGTCTCTGTGACCATGGT
GGTGGCGCTGCTCATCGTTTGCGACGTTCCCTCAGCCTCTGCCCAAAGAAAGAAGGAGATGGTGTTATCT
GAAAAGGTTAGTCAGCTGATGGAATGGACTAACAAAAGACCTGTAATAAGAATGAATGGAGACAAGTTCC
GTCGCCTTGTGAAAGCCCCACCGAGAAATTACTCCGTTATCGTCATGTTCACTGCTCTCCAACTGCATAG
ACAGTGTGTCGTTTGCAAGCAAGCTGATGAAGAATTCCAGATCCTGGCAAACTCCTGGCGATACTCCAGT
GCATTCACCAACAGGATATTTTTTGCCATGGTGGATTTTGATGAAGGCTCTGATGTATTTCAGATGCTAA
ACATGAATTCAGCTCCAACTTTCATCAACTTTCCTGCAAAAGGGAAACCCAAACGGGGTGATACATATGA
GTTACAGGTGCGGGGTTTTTCAGCTGAGCAGATTGCCCGGTGGATCGCCGACAGAACTGATGTCAATATT
AGAGTGATTAGACCCCCAAATTATGCTGGTCCCCTTATGTTGGGATTGCTTTTGGCTGTTATTGGTGGAC
TTGTGTATCTTCGAAGAAGTAATATGGAATTTCTCTTTAATAAAACTGGATGGGCTTTTGCAGCTTTGTG
TTTTGTGCTTGCTATGACATCTGGTCAAATGTGGAACCATATAAGAGGACCACCATATGCCCATAAGAAT
CCCCACACGGGACATGTGAATTATATCCATGGAAGCAGTCAAGCCCAGTTTGTAGCTGAAACACACATTG
TTCTTCTGTTTAATGGTGGAGTTACCTTAGGAATGGTGCTTTTATGTGAAGCTGCTACCTCTGACATGGA
TATTGGAAAGCGAAAGATAATGTGTGTGGCTGGTATTGGACTTGTTGTATTATTCTTCAGTTGGATGCTC
TCTATTTTTAGATCTAAATATCATGGCTACCCATACAGCTTTCTGATGAGTTAA

Translation (367 aa):
MRKGKGPICLFSRPTLRPSRSKVSLIEGRGANMAARWRFWCVSVTMVVALLIVCDVPSASAQRKKEMVLS
EKVSQLMEWTNKRPVIRMNGDKFRRLVKAPPRNYSVIVMFTALQLHRQCVVCKQADEEFQILANSWRYSS
AFTNRIFFAMVDFDEGSDVFQMLNMNSAPTFINFPAKGKPKRGDTYELQVRGFSAEQIARWIADRTDVNI
RVIRPPNYAGPLMLGLLLAVIGGLVYLRRSNMEFLFNKTGWAFAALCFVLAMTSGQMWNHIRGPPYAHKN
PHTGHVNYIHGSSQAQFVAETHIVLLFNGGVTLGMVLLCEAATSDMDIGKRKIMCVAGIGLVVLFFSWML
SIFRSKYHGYPYSFLMS


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 Re-query CCDS DB by:   CCDS ID
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